RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CFAP46Q8IYW2 2715 aa10.96□□□□□ -0.66
VPS4A-204ENST00000566354 ADGRG4Q8IZF6 3080 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 TRAV38-1A0A0B4J264 116 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 A0A0U1RQK1 487 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 SERTM2A0A1B0GWG4 89 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 ZNF320A2RRD8 509 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 VSTM5A8MXK1 200 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 SPINT2O43291 252 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 CRYAAP02489 173 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 ADH4P08319 380 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 SSTR5P35346 364 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 TRAT1Q6PIZ9 186 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 OR13A1Q8NGR1 328 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 TRAPPC1Q9Y5R8 145 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 CACNA1DQ01668 2161 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 OPRK1P41145 380 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 ATP5G3P48201 142 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 EDDM3BP56851 147 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 LINC00205P59089 165 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 UBE2G2P60604 165 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 RBPJQ06330 500 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 GCSAMLQ5JQS6 135 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 WDR82Q6UXN9 313 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 PXMP4Q9Y6I8 212 aa10.95□□□□□ -0.66
VPS4A-204ENST00000566354 IGHV3-43A0A0B4J1X8 118 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 A0A0G2JNJ9 132 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 TCF21O43680 179 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 HPRT1P00492 218 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 OR9G9P0C7N8 305 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 IGHV3-43DP0DP04 118 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 BMP5P22003 454 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 ZNF474Q6S9Z5 364 aaPredicted RBP10.94□□□□□ -0.66
VPS4A-204ENST00000566354 RFESDQ8TAC1 157 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 Q9UFV3 132 aa10.94□□□□□ -0.66
VPS4A-204ENST00000566354 DEFB108AA8MXU0 73 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 EGR1P18146 543 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 DUTP33316 252 aaKnown RBP10.93□□□□□ -0.66
VPS4A-204ENST00000566354 PAX5Q02548 391 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 PRSS8Q16651 343 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 SMIM21Q3B7S5 101 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 OR52E5Q8NH55 327 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 ORAOV1Q8WV07 137 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 SFRP2Q96HF1 295 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 DERL1Q9BUN8 251 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 SFXN3Q9BWM7 321 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 CHODLQ9H9P2 273 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 TRGV8A0A0C4DH27 118 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 GPR12P47775 334 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 PDLIM3Q53GG5 364 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-204ENST00000566354 TREML4Q6UXN2 200 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 TPRX1Q8N7U7 411 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 OR4A16Q8NH70 328 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 SGMS2Q8NHU3 365 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 LPAR2Q9HBW0 351 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 TUBG2Q9NRH3 451 aa10.93□□□□□ -0.66
VPS4A-204ENST00000566354 AURKAIP1Q9NWT8 199 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-204ENST00000566354 MDFIC2A0A1B0GVS7 189 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 C20orf202A1L168 122 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 C15orf65H3BRN8 121 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 CXorf1O96002 111 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 TFF1P04155 84 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 STAG3L2P0CL84 134 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 PRAMEF5Q5TYX0 476 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 PRAMEF6Q5VXH4 476 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 CLUHP3Q96NS8 147 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 PATZ1Q9HBE1 687 aaKnown RBP10.92□□□□□ -0.66
VPS4A-204ENST00000566354 HEYLQ9NQ87 328 aaPredicted RBP10.92□□□□□ -0.66
VPS4A-204ENST00000566354 ELOVL5Q9NYP7 299 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 METRNQ9UJH8 293 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 FCGR3BO75015 233 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 IL6RP08887 468 aaPredicted RBP10.92□□□□□ -0.66
VPS4A-204ENST00000566354 HOXA4Q00056 320 aaPredicted RBP10.92□□□□□ -0.66
VPS4A-204ENST00000566354 ZNF114Q8NC26 417 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 ST6GALNAC3Q8NDV1 305 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 FKBP11Q9NYL4 201 aa10.92□□□□□ -0.66
VPS4A-204ENST00000566354 RBFOX2O43251 390 aaKnown RBP eCLIP10.91□□□□□ -0.66
VPS4A-204ENST00000566354 TIMM8AO60220 97 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-204ENST00000566354 PROP1O75360 226 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 IGKV3-15P01624 115 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 ARL14EPLP0DKL9 152 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 KITLGP21583 273 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 YPEL3P61236 119 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-204ENST00000566354 DNAJC4Q9NNZ3 241 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 TRBV20OR9-2A0A075B6H5 130 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 PRSS46E5RG02 174 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 RRHO14718 337 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 AGFG2O95081 481 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 SCGB1D1O95968 90 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 OR4A8P0C604 315 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 VDAC2P45880 294 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-204ENST00000566354 ERVK-16P61578 105 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 MGST2Q99735 147 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 GGTLC1Q9BX51 225 aa10.91□□□□□ -0.66
VPS4A-204ENST00000566354 HIVEP3Q5T1R4 2406 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 CADP27708 2225 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 PGPEP1LA6NFU8 196 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 CBY3A6NI87 242 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 MORN2Q502X0 79 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 COL5A1-AS1Q5SY13 56 aa10.9□□□□□ -0.66
VPS4A-204ENST00000566354 CD177Q8N6Q3 437 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms