RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SLC25A24Q6NUK1 477 aa15.7■□□□□ 0.1
CLN3-219ENST00000565778 ZC4H2Q9NQZ6 224 aa15.7■□□□□ 0.1
CLN3-219ENST00000565778 OR51B2Q9Y5P1 312 aa15.7■□□□□ 0.1
CLN3-219ENST00000565778 TENM3Q9P273 2699 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 M0QYG6 137 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 IFNA6P05013 189 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 SERPINE2P07093 398 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 EDN2P20800 178 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 UCP3P55916 312 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 HSD17B13Q7Z5P4 300 aaPredicted RBP15.69■□□□□ 0.1
CLN3-219ENST00000565778 TBC1D26Q86UD7 250 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 THAP7Q9BT49 309 aaPredicted RBP15.69■□□□□ 0.1
CLN3-219ENST00000565778 FKBP11Q9NYL4 201 aa15.69■□□□□ 0.1
CLN3-219ENST00000565778 TECRQ9NZ01 308 aaKnown RBP15.69■□□□□ 0.1
CLN3-219ENST00000565778 ZNF785A8K8V0 405 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 CBLN1P23435 193 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 PTBP1P26599 531 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLN3-219ENST00000565778 WT1-ASQ06250 92 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 GUCA2BQ16661 112 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 SLC38A6Q8IZM9 456 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 CADM3Q8N126 398 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 GDPD1Q8N9F7 314 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 MRPS26Q9BYN8 205 aaKnown RBP15.68■□□□□ 0.1
CLN3-219ENST00000565778 NDUFA4L2Q9NRX3 87 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 SLC2A8Q9NY64 477 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 EXTL2Q9UBQ6 330 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 KLK11Q9UBX7 282 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 PRNDQ9UKY0 176 aa15.68■□□□□ 0.1
CLN3-219ENST00000565778 GPR183P32249 361 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 CD81P60033 236 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 PLET1Q6UQ28 207 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 GPR141Q7Z602 305 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 OR52I2Q8NH67 350 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 ZNF502Q8TBZ5 544 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 LSM10Q969L4 123 aaKnown RBP15.67■□□□□ 0.1
CLN3-219ENST00000565778 TMEM56Q96MV1 263 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 TSC22D3Q99576 134 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 TM2D3Q9BRN9 247 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 FAM212BQ9NTI7 297 aaPredicted RBP15.67■□□□□ 0.1
CLN3-219ENST00000565778 SELENOKQ9Y6D0 94 aa15.67■□□□□ 0.1
CLN3-219ENST00000565778 C3orf84H3BNL1 204 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 TPPPO94811 219 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 PGAM2P15259 253 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 RNASE10Q5GAN6 216 aaKnown RBP15.66■□□□□ 0.1
CLN3-219ENST00000565778 LAX1Q8IWV1 398 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 VN1R17PQ8TDU5 208 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 CACNG8Q8WXS5 425 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 NEURL2Q9BR09 285 aa15.66■□□□□ 0.1
CLN3-219ENST00000565778 IGHV3-35A0A0C4DH35 117 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 CD3DP04234 171 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 HAGHQ16775 308 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 H2BFWTQ7Z2G1 175 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 UXS1Q8NBZ7 420 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 OR5B3Q8NH48 314 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 C15orf40Q8WUR7 153 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 ABHD1Q96SE0 405 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 PLEKHA3Q9HB20 300 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 PALMDQ9NP74 551 aa15.65■□□□□ 0.1
CLN3-219ENST00000565778 F11RQ9Y624 299 aaKnown RBP15.65■□□□□ 0.1
CLN3-219ENST00000565778 RGS5O15539 181 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 CD7P09564 240 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 ALDH3B2P48448 385 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 TM4SF20Q53R12 229 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 ZNF57Q68EA5 555 aaPredicted RBP15.64■□□□□ 0.09
CLN3-219ENST00000565778 OR4A16Q8NH70 328 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 MUC7Q8TAX7 377 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 WDR89Q96FK6 387 aaPredicted RBP15.64■□□□□ 0.09
CLN3-219ENST00000565778 MTFP1Q9UDX5 166 aa15.64■□□□□ 0.09
CLN3-219ENST00000565778 IGHV3-21A0A0B4J1V1 117 aa15.63■□□□□ 0.09
CLN3-219ENST00000565778 TMEM213A2RRL7 107 aa15.63■□□□□ 0.09
CLN3-219ENST00000565778 PI3P19957 117 aa15.63■□□□□ 0.09
CLN3-219ENST00000565778 UNQ9165/PRO28630Q6UXU0 137 aa15.63■□□□□ 0.09
CLN3-219ENST00000565778 SEC22AQ96IW7 307 aa15.63■□□□□ 0.09
CLN3-219ENST00000565778 TMEM14BQ9NUH8 114 aa15.63■□□□□ 0.09
CLN3-219ENST00000565778 HUWE1Q7Z6Z7 4374 aaKnown RBP15.62■□□□□ 0.09
CLN3-219ENST00000565778 OR2T8A6NH00 312 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 DBX1A6NMT0 343 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 C15orf61A6NNL5 157 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 A8MWP6 167 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 TGOLN2O43493 480 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 IGKV1-39P01597 117 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 IGKV1D-39P04432 117 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 MFAP2P55001 183 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 ARRDC1Q8N5I2 433 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 DEFB125Q8N687 156 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 OR1L6Q8NGR2 347 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 MRGPRFQ96AM1 343 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 ZNF486Q96H40 463 aaPredicted RBP15.62■□□□□ 0.09
CLN3-219ENST00000565778 SPATA25Q9BR10 227 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 MLXQ9UH92 298 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 UFC1Q9Y3C8 167 aa15.62■□□□□ 0.09
CLN3-219ENST00000565778 OR11H12B2RN74 326 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 CTDSP2O14595 271 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 TBPP20226 339 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 PIGPP57054 158 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 SPCS2Q15005 226 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 CLVS1Q8IUQ0 354 aaPredicted RBP15.61■□□□□ 0.09
CLN3-219ENST00000565778 SCARB1Q8WTV0 552 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 MARC2Q969Z3 335 aa15.61■□□□□ 0.09
CLN3-219ENST00000565778 CITED4Q96RK1 184 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms