RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 LINC00869P0C866 280 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 CD1BP29016 333 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 SULT1A1P50225 295 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 MFAP4P55083 255 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 TUSC1Q2TAM9 212 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 LRRC75BQ2VPJ9 315 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 TMEM30BQ3MIR4 351 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 FAM106AQ4KMX7 169 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 LDLRAD3Q86YD5 345 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 PDPNQ86YL7 162 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 RSG1Q9BU20 258 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 SLA2Q9H6Q3 261 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 REV3LO60673 3130 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 LOXP28300 417 aaPredicted RBP7.59□□□□□ -1.19
VPS39-205ENST00000562258 PSG5Q15238 335 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 TMEM249Q2WGJ8 235 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 OR4B1Q8NGF8 309 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 NDFIP1Q9BT67 221 aa7.59□□□□□ -1.19
VPS39-205ENST00000562258 CD74P04233 296 aa7.59□□□□□ -1.2
VPS39-205ENST00000562258 INHBBP09529 407 aa7.59□□□□□ -1.2
VPS39-205ENST00000562258 VDAC2P45880 294 aaPredicted RBP7.59□□□□□ -1.2
VPS39-205ENST00000562258 CDC34P49427 236 aaPredicted RBP7.59□□□□□ -1.2
VPS39-205ENST00000562258 RANP62826 216 aaKnown RBP7.59□□□□□ -1.2
VPS39-205ENST00000562258 TMEM204Q9BSN7 226 aa7.59□□□□□ -1.2
VPS39-205ENST00000562258 KPTNQ9Y664 436 aa7.59□□□□□ -1.2
VPS39-205ENST00000562258 URGCP-MRPS24S4R325 110 aa7.59□□□□□ -1.2
VPS39-205ENST00000562258 BPTFQ12830 3046 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 IGHV1-3A0A0C4DH29 117 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 B3GALNT1O75752 331 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 CD99P14209 185 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 DUTP33316 252 aaKnown RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 OR5I1Q13606 314 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 C16orf82Q7Z2V1 217 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 TCTEX1D1Q8N7M0 179 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 WNT10AQ9GZT5 417 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 NPVFQ9HCQ7 196 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 MAP1LC3B2A6NCE7 125 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 ZNF727A8MUV8 499 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 NAPSAO96009 420 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 CHD3Q12873 2000 aaKnown RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 TIGITQ495A1 244 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 OR10W1Q8NGF6 305 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 NTNG2Q96CW9 530 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 MAP1LC3BQ9GZQ8 125 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 ALX4Q9H161 411 aaPredicted RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 FBLN5Q9UBX5 448 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 FOXA2Q9Y261 457 aaPredicted RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 BCL2L11O43521 198 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 ARL3P36405 182 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 RPL30P62888 115 aaKnown RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 HABP2Q14520 560 aaPredicted RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 TMEM187Q14656 261 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 MIC13Q5XKP0 118 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 SDHCQ99643 169 aaPredicted RBP7.58□□□□□ -1.2
VPS39-205ENST00000562258 CTSZQ9UBR2 303 aa7.58□□□□□ -1.2
VPS39-205ENST00000562258 IL4P05112 153 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 PRB4P10163 310 aaPredicted RBP7.57□□□□□ -1.2
VPS39-205ENST00000562258 PLA2G2AP14555 144 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 MYOD1P15172 320 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 GATA4P43694 442 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 UCP3P55916 312 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 PJVKQ0ZLH3 352 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 WFDC11Q8NEX6 87 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 CABLES2Q9BTV7 478 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 ATG2AQ2TAZ0 1938 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 FREM2Q5SZK8 3169 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 TCRBV4S1A1TA0A5B7 111 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 ZNF737O75373 536 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 HYPMO75409 117 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 SCO1O75880 301 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 GATA2P23769 480 aaPredicted RBP7.57□□□□□ -1.2
VPS39-205ENST00000562258 AKR1C3P42330 323 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 BTN1A1Q13410 526 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 FBXL19-AS1Q494R0 122 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 TPTE2P1Q5T6R2 138 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 NIPSNAP3BQ9BS92 247 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 MDFIC2A0A1B0GVS7 189 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 BUB1B-PAK6H3BSN5 160 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 C3orf36Q3SXR2 165 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 C10orf113Q5VZT2 155 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 SCARB1Q8WTV0 552 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 SPOCK3Q9BQ16 436 aa7.57□□□□□ -1.2
VPS39-205ENST00000562258 RTBDNQ9BSG5 229 aaPredicted RBP7.57□□□□□ -1.2
VPS39-205ENST00000562258 AP4M1O00189 453 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 IGKV1-16P04430 117 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 DAZAP2Q15038 168 aaPredicted RBP7.56□□□□□ -1.2
VPS39-205ENST00000562258 DHRS11Q6UWP2 260 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 ZNF680Q8NEM1 530 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 LRP4O75096 1905 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 UCP1P25874 307 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 P2RY1P47900 373 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 RHOGP84095 191 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 HMGN3Q15651 99 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 ATP6V1FQ16864 119 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 MIDNQ504T8 468 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 SMIM7Q9BQ49 75 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 SLC45A2Q9UMX9 530 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 NACAE9PAV3 2078 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 OR2T8A6NH00 312 aa7.56□□□□□ -1.2
VPS39-205ENST00000562258 H2BFSP57053 126 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms