RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KRTAP27-1Q3LI81 207 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 ZNF841Q6ZN19 808 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 FDCSPQ8NFU4 85 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 PRRG4Q9BZD6 226 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 KCNIP2Q9NS61 270 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 DIDO1Q9BTC0 2240 aaKnown RBP11.07□□□□□ -0.64
CLK3-206ENST00000562078 ESPL1Q14674 2120 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 A0A096LPE4 126 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 TRAV38-1A0A0B4J264 116 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 A0A1W2PPZ6 126 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 FAM181BA6NEQ2 426 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 GAGE10A6NGK3 116 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 TMEM136Q6ZRR5 245 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 KIR3DL3Q8N743 410 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 ZNF439Q8NDP4 499 aa11.07□□□□□ -0.64
CLK3-206ENST00000562078 CLDN1O95832 211 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 IGKV1-5P01602 117 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 NPY1RP25929 384 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 FOXG1P55316 489 aaPredicted RBP11.06□□□□□ -0.64
CLK3-206ENST00000562078 DAZAP2Q15038 168 aaPredicted RBP11.06□□□□□ -0.64
CLK3-206ENST00000562078 CHRDL1Q9BU40 450 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 TRBV9A0A0B4J1U6 114 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 IGKV1-6A0A0C4DH72 117 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 KLRC4-KLRK1H3BQV0 150 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 ZNHIT1O43257 154 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 SLC25A6P12236 298 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 FNDC4Q9H6D8 234 aaPredicted RBP11.06□□□□□ -0.64
CLK3-206ENST00000562078 PEF1Q9UBV8 284 aaKnown RBP11.06□□□□□ -0.64
CLK3-206ENST00000562078 SMPXQ9UHP9 88 aa11.06□□□□□ -0.64
CLK3-206ENST00000562078 PPIAL4EA0A075B759 164 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 PPIAL4CA0A0B4J2A2 164 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 PPIAL4DF5H284 164 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 HSPB6O14558 160 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 PPIAL4FP0DN26 164 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 S100GP29377 79 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 GPR6P46095 362 aaPredicted RBP11.05□□□□□ -0.64
CLK3-206ENST00000562078 TNXAQ16473 311 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 NPCDR1Q9BY65 106 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 LINC00470Q9BZP3 86 aa11.05□□□□□ -0.64
CLK3-206ENST00000562078 hCG_38984A0A1B0GV85 526 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 hDV102S1A0JD36 115 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 J3QR06 171 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 CD5LO43866 347 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 AZU1P20160 251 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 TCL1AP56279 114 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 TGFBR3Q03167 851 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 SMAGPQ0VAQ4 97 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 CNN3Q15417 329 aaKnown RBP11.04□□□□□ -0.64
CLK3-206ENST00000562078 TBR1Q16650 682 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 ZNF766Q5HY98 468 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 TMEM14EPQ6UXP3 125 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 BORCS8Q96FH0 119 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 GTSF1LQ9H1H1 148 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 DEFB127Q9H1M4 99 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 CEP295Q9C0D2 2601 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 FAM231BA6NCW3 169 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 TUSC2O75896 110 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 UBE2G1P62253 170 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 SCGB2A2Q13296 93 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 UFSP1Q6NVU6 142 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 TMEM178AQ8NBL3 297 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 OR8B3Q8NGG8 313 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 OR8B2Q96RD0 313 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 HES4Q9HCC6 221 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 NPVFQ9HCQ7 196 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 V9GYV3 84 aa11.04□□□□□ -0.64
CLK3-206ENST00000562078 A0A087X0K7 114 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 SERTM2A0A1B0GWG4 89 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 ZNF503-AS2A6NEH8 195 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 SVILO95425 2214 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 CLDN14O95500 239 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 CCNOP22674 350 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 RBM11P57052 281 aaKnown RBP11.03□□□□□ -0.64
CLK3-206ENST00000562078 RNFT1Q5M7Z0 435 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 MRPL54Q6P161 138 aaKnown RBP11.03□□□□□ -0.64
CLK3-206ENST00000562078 C12orf54Q6X4T0 127 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 ZNF391Q9UJN7 358 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 ARL2-SNX15V9GYD0 113 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 LAMA5O15230 3695 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 SPTBN4Q9H254 2564 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 A0A1B0GV72 72 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 C7orf71A4D174 169 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 LRP5LA4QPB2 252 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 C2orf70A6NJV1 201 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 M0R2Z0 102 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 HAND1O96004 215 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 CCL2P13500 99 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 NRN1LQ496H8 165 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 TMEM147Q9BVK8 224 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 ATP23Q9Y6H3 246 aa11.03□□□□□ -0.64
CLK3-206ENST00000562078 MT-ND6P03923 174 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 LINC00869P0C866 280 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 TMEM42Q69YG0 159 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 SCCPDHQ8NBX0 429 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 SLC25A40Q8TBP6 338 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 C18orf32Q8TCD1 76 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 PIGCQ92535 297 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 C12orf49Q9H741 205 aa11.02□□□□□ -0.64
CLK3-206ENST00000562078 OR4C46A6NHA9 309 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 VSTM5A8MXK1 200 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms