RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IGHV2-70DA0A0C4DH43 119 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 MAP1LC3B2A6NCE7 125 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 ODF3BA8MYP8 253 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 MMP23AO75900 390 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 NXPH3O95157 252 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 CXorf1O96002 111 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 MOSP00540 346 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 IGKV1-16P04430 117 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 FAM106CPP0CH98 169 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 BCL2P10415 239 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 COX6B1P14854 86 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 SLC25A16P16260 332 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 RPL27AP46776 148 aaKnown RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 CDC34P49427 236 aaPredicted RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 UBE2E1P51965 193 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 IZUMO4Q1ZYL8 232 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 TUSC1Q2TAM9 212 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 FFAR4Q5NUL3 377 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 SLC35E3Q7Z769 313 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 PPP1R27Q86WC6 154 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 C11orf42Q8N5U0 333 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 OR10G9Q8NGN4 311 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 OR10G7Q8NGN6 311 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 OR1L4Q8NGR5 311 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 OR2T10Q8NGZ9 312 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 OR1P1Q8NH06 330 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 LEAP2Q969E1 77 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 MALSU1Q96EH3 234 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 RCC1LQ96I51 464 aaKnown RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 LINC00052Q96N35 136 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 TMUB1Q9BVT8 246 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 MRPL32Q9BYC8 188 aaKnown RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 MAP1LC3BQ9GZQ8 125 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 TUBA4BQ9H853 241 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 TMEM167BQ9NRX6 74 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 GAR1Q9NY12 217 aaKnown RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 PKDREJQ9NTG1 2253 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 ICE1Q9Y2F5 2266 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 HIVEP3Q5T1R4 2406 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 TEX50A0A1B0GTY4 177 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 CXorf65A6NEN9 183 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 RNF223E7ERA6 249 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 F6UZH7 168 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 CLN5O75503 358 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 UQCRFS1P47985 274 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 HOXA4Q00056 320 aaPredicted RBP6.09□□□□□ -1.43
VPS39-204ENST00000561818 CD69Q07108 199 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 PLGLAQ15195 96 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 PRSS8Q16651 343 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 AVPI1Q5T686 147 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 PQLC2Q6ZP29 291 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 MOB3BQ86TA1 216 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 NPBQ8NG41 125 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 GATAD1Q8WUU5 269 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 FAM168AQ92567 244 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 RPUSD4Q96CM3 377 aaKnown RBP6.09□□□□□ -1.43
VPS39-204ENST00000561818 SIRT7Q9NRC8 400 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 SMCO4Q9NRQ5 59 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 RPRMQ9NS64 109 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 SLC45A2Q9UMX9 530 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 SIGLEC9Q9Y336 463 aa6.09□□□□□ -1.43
VPS39-204ENST00000561818 LSM4Q9Y4Z0 139 aaKnown RBP6.09□□□□□ -1.43
VPS39-204ENST00000561818 ACACBO00763 2458 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 ROS1P08922 2347 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 DSPP15924 2871 aaKnown RBP6.08□□□□□ -1.44
VPS39-204ENST00000561818 TRAV30A0A087WSZ9 112 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 A0A087WWC5 75 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 A0A1W2PPE3 182 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 PRSS46E5RG02 174 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 LY6LH3BQJ8 138 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 RRHO14718 337 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 NBR2O15453 112 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 TGOLN2O43493 480 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 TOX4O94842 621 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 NDUFA3O95167 84 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 CA2P00918 260 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 IGHV3-7P01780 117 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 HIST1H1BP16401 226 aaKnown RBP6.08□□□□□ -1.44
VPS39-204ENST00000561818 B2MP61769 119 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 RUNX1Q01196 453 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 MEF2BQ02080 365 aaPredicted RBP6.08□□□□□ -1.44
VPS39-204ENST00000561818 CDSNQ15517 529 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 PVRIGQ6DKI7 326 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 TREML4Q6UXN2 200 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 SLC16A13Q7RTY0 426 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 HAPLN4Q86UW8 402 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 CLDND2Q8NHS1 167 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 PCNPQ8WW12 178 aaKnown RBP6.08□□□□□ -1.44
VPS39-204ENST00000561818 IGFBPL1Q8WX77 278 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 ATP6V0BQ99437 205 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 RSG1Q9BU20 258 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 GGTLC1Q9BX51 225 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 HINT2Q9BX68 163 aa6.08□□□□□ -1.44
VPS39-204ENST00000561818 LOC102723971A0A1B0GUV8 181 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 A0A1W2PPI3 338 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 C22orf46C9J442 243 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 M0QZK8 103 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 SLC25A17O43808 307 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 VENTXO95231 258 aa6.07□□□□□ -1.44
VPS39-204ENST00000561818 IGLV2-23P01705 113 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms