RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ZNF436Q9C0F3 470 aaPredicted RBP13.08□□□□□ -0.32
TSPAN3-208ENST00000560514 ELF5Q9UKW6 265 aaPredicted RBP13.08□□□□□ -0.32
TSPAN3-208ENST00000560514 RBMX2Q9Y388 322 aaKnown RBP13.08□□□□□ -0.32
TSPAN3-208ENST00000560514 A0A0A6YYH2 397 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 A6NJ64 397 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 CYB5BO43169 146 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 TGOLN2O43493 480 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 ATP6V1G2O95670 118 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 RPL8P62917 257 aaKnown RBP13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 MSMO1Q15800 293 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 KLK9Q2XQG4 91 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 SFXN4Q6P4A7 337 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 DAPK2Q9UIK4 370 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 ANXA10Q9UJ72 324 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 KLK9Q9UKQ9 250 aa13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 RRP15Q9Y3B9 282 aaKnown RBP13.07□□□□□ -0.32
TSPAN3-208ENST00000560514 HRASP01112 189 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 IGLV2-14P01704 120 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 CTSDP07339 412 aaPredicted RBP13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 GNG2P59768 71 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 ZNF66Q6ZN08 573 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 SSX9Q7RTT3 188 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 PUSL1Q8N0Z8 303 aaKnown RBP13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 TCTEX1D2Q8WW35 142 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 AIFM2Q9BRQ8 373 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 ETV7Q9Y603 341 aa13.06□□□□□ -0.32
TSPAN3-208ENST00000560514 A0A1B0GW64 132 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 CA1P00915 261 aaPredicted RBP13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 HLA-GP17693 338 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 NFYAP23511 347 aaPredicted RBP13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 PTBP1P26599 531 aaKnown RBP eCLIP13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 SDC2P34741 201 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 TMEM187Q14656 261 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 ZNF773Q6PK81 442 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 RHBDL2Q9NX52 303 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 ABCA13Q86UQ4 5058 aa13.05□□□□□ -0.32
TSPAN3-208ENST00000560514 TMEM235A6NFC5 223 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 OR2T8A6NH00 312 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 TFPI2P48307 235 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 RPL30P62888 115 aaKnown RBP13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 EIF4EBP1Q13541 118 aaPredicted RBP13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 MFSD4AQ8N468 514 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 ZBTB34Q8NCN2 500 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 HRASLSQ9HDD0 168 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 SPATA2Q9UM82 520 aa13.04□□□□□ -0.32
TSPAN3-208ENST00000560514 SMIM30A4D0T7 59 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 NDUFA4O00483 81 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 ZNF207O43670 478 aaKnown RBP13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 SSX5O60225 188 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 ZNF124Q15973 351 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 VN1R17PQ8TDU5 208 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 NUDCD2Q8WVJ2 157 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 BSCL2Q96G97 398 aaPredicted RBP13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 CMTM3Q96MX0 182 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 HRH4Q9H3N8 390 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 DIABLOQ9NR28 239 aa13.03□□□□□ -0.32
TSPAN3-208ENST00000560514 IGHV4-4A0A075B6R2 117 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 IGKV1D-13A0A0B4J2D9 117 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 K7EMT4 169 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 IGKV1-13P0DP09 117 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 SPSB3Q6PJ21 355 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 HOGA1Q86XE5 327 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 LGALS14Q8TCE9 139 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 PLA2G2EQ9NZK7 142 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 FAT2Q9NYQ8 4349 aa13.02□□□□□ -0.33
TSPAN3-208ENST00000560514 TRAV18A0A075B6X5 111 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 IGHV3OR16-8A0A075B7F1 116 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 TRAV10A0A0B4J240 114 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 BRWD1-AS2P59051 145 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 PVRIGQ6DKI7 326 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 CROCCP3Q8IVE0 287 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 BEST4Q8NFU0 473 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 COMMD5Q9GZQ3 224 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 BET1LQ9NYM9 111 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 TAS2R8Q9NYW2 309 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 DNAH2Q9P225 4427 aa13.01□□□□□ -0.33
TSPAN3-208ENST00000560514 IGKV3-7A0A075B6H7 116 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 M0R2N4 97 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 RBFOX2O43251 390 aaKnown RBP eCLIP13□□□□□ -0.33
TSPAN3-208ENST00000560514 CBX5P45973 191 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 OR2B8PP59922 312 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 ARPC4P59998 168 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 MXD1Q05195 221 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 IDNKQ5T6J7 187 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 SLC25A24Q6NUK1 477 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 UBAC2Q8NBM4 344 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 GIMAP1Q8WWP7 306 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 RNF2Q99496 336 aa13□□□□□ -0.33
TSPAN3-208ENST00000560514 SRSF8Q9BRL6 282 aaKnown RBP13□□□□□ -0.33
TSPAN3-208ENST00000560514 CGB1A6NKQ9 187 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 C15orf62A8K5M9 175 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 FGF2P09038 288 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 P0DMU3 169 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 FAM231AP0DMU4 169 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 FAM231CP0DMU5 169 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 HLA-DMBP28068 263 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 FCGR2CP31995 323 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 PAFAH1B2P68402 229 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 TIMM50Q3ZCQ8 353 aa12.99□□□□□ -0.33
TSPAN3-208ENST00000560514 KCTD21Q4G0X4 260 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms