RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 HPRT1P00492 218 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 PF4P02776 101 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 NQO2P16083 231 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 CXCL3P19876 107 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 RND3P61587 244 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 PPP1R1AQ13522 171 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 DEFB136Q30KP8 78 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 ZNF585BQ52M93 769 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 OR4A47Q6IF82 309 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 TMEM65Q6PI78 240 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 GSG1LQ6UXU4 331 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 SSX9Q7RTT3 188 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 TBC1D26Q86UD7 250 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 LINC00482Q8N8I6 264 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 ZNF491Q8N8L2 437 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 UXS1Q8NBZ7 420 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 WFDC9Q8NEX5 89 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 OR4A5Q8NH83 315 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 CASTOR1Q8WTX7 329 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 C4orf3Q8WVX3 66 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 MRGPRFQ96AM1 343 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 RAX2Q96IS3 184 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 UBE2E2Q96LR5 201 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 TMEM68Q96MH6 324 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 P2RX4Q99571 388 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 AIFM2Q9BRQ8 373 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 PDCD10Q9BUL8 212 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 C5orf66Q9H5L9 145 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 SLA2Q9H6Q3 261 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 GNB4Q9HAV0 340 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 SLC2A9Q9NRM0 540 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 BET1LQ9NYM9 111 aa7.28□□□□□ -1.24
LDLR-211ENST00000560173 TEX13DA0A0J9YY54 714 aaPredicted RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 MSGN1A6NI15 193 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 HMSDA8MTL9 139 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 H3BUA1 57 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 GOSR2O14653 212 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 ACTL6BO94805 426 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 BRI3O95415 125 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 IFNA21P01568 189 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 IL6RP08887 468 aaPredicted RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 PET100P0DJ07 73 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 PI3P19957 117 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 MAS1LP35410 378 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 MYCNOSP40205 109 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 LPAR6P43657 344 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 RPL8P62917 257 aaKnown RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 RUNX1Q01196 453 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 FHL3Q13643 280 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 NDUFA5Q16718 116 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 MRPL41Q8IXM3 137 aaKnown RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 ADAD2Q8NCV1 583 aaKnown RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 OR5T1Q8NG75 326 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 OR52B4Q8NGK2 314 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 GALNT14Q96FL9 552 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 DUX3Q96PT4 197 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 SPIN2AQ99865 258 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 SPIN2BQ9BPZ2 258 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 RTBDNQ9BSG5 229 aaPredicted RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 FAM212BQ9NTI7 297 aaPredicted RBP7.27□□□□□ -1.25
LDLR-211ENST00000560173 TMEM140Q9NV12 185 aa7.27□□□□□ -1.25
LDLR-211ENST00000560173 TRAV3A0A0B4J244 114 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 A0A1B0GW64 132 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 CRYM-AS1A6NIL9 109 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 DBX1A6NMT0 343 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 MARCH11A6NNE9 402 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 TEX22C9J3V5 150 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 G3V4G9 280 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 I3L521 148 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 CCL24O00175 119 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 UPK2O00526 184 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 RGS13O14921 159 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 MPPED1O15442 326 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 TRGV3P03979 118 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 FGF2P09038 288 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 OR9G9P0C7N8 305 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 APELAP0DMC3 54 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 MYOD1P15172 320 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 RPA2P15927 270 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 RPL27AP46776 148 aaKnown RBP7.26□□□□□ -1.25
LDLR-211ENST00000560173 PIGPP57054 158 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 TPPP2P59282 170 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 ERVK-16P61578 105 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 SAMD5Q5TGI4 173 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 DMBX1Q8NFW5 382 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 MS4A10Q96PG2 267 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 OR5B12Q96R08 314 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 NMES1Q9C002 83 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 NAA60Q9H7X0 242 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 HSPB11Q9Y547 144 aa7.26□□□□□ -1.25
LDLR-211ENST00000560173 KMT2CQ8NEZ4 4911 aaKnown RBP7.25□□□□□ -1.25
LDLR-211ENST00000560173 DUXBA0A1W2PPF3 345 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 C5orf51A6NDU8 294 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 CGB1A6NKQ9 187 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 E7EUB6 86 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 H0Y980 276 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 KRASP01116 189 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 IGKV1-39P01597 117 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 IGKV1D-39P04432 117 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 LGALS1P09382 135 aaKnown RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms