RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PDE6DO43924 150 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 PLAUP00749 431 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 IL6RP08887 468 aaPredicted RBP10.19□□□□□ -0.78
LDLR-205ENST00000557933 IGHV1-2P23083 117 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 TPPP2P59282 170 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 EFNB3Q15768 340 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 LBHQ53QV2 105 aaPredicted RBP10.19□□□□□ -0.78
LDLR-205ENST00000557933 DCAF10Q5QP82 559 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 C11orf53Q8IXP5 236 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 CD177Q8N6Q3 437 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 LRRC29Q8WV35 223 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 GP6Q9HCN6 339 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 OOEPA6NGQ2 149 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 NPIPB11E5RHQ5 1161 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 CD46P15529 392 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 GCHFRP30047 84 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 SRIP30626 198 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 BRS3P32247 399 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 GPR6P46095 362 aaPredicted RBP10.19□□□□□ -0.78
LDLR-205ENST00000557933 LCN2P80188 198 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 SRSF6Q13247 344 aaKnown RBP10.19□□□□□ -0.78
LDLR-205ENST00000557933 SSPNQ14714 243 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 CENPWQ5EE01 88 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 IGF2-ASQ6U949 168 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 LINC00596Q86U02 117 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 OR2Z1Q8NG97 314 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 FAM168AQ92567 244 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 SPRY4Q9C004 299 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 TMEM140Q9NV12 185 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 DIRC3C9JPN6 131 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 APELAP0DMC3 54 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 ATP6V1FQ16864 119 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 WDR82Q6UXN9 313 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 C11orf42Q8N5U0 333 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 SIGLECL1Q8N7X8 197 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 RND1Q92730 232 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 SSBP4Q9BWG4 385 aaPredicted RBP10.18□□□□□ -0.78
LDLR-205ENST00000557933 KCNIP2Q9NS61 270 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 WNK2Q9Y3S1 2297 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 DCHS2Q6V1P9 2916 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 TRAV5A0A0B4J249 113 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 A0A1W2PN81 502 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 M0QZ24 198 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 RAB29O14966 203 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 GFRA3O60609 400 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 DUTP33316 252 aaKnown RBP10.18□□□□□ -0.78
LDLR-205ENST00000557933 SUMO1P63165 101 aaKnown RBP10.18□□□□□ -0.78
LDLR-205ENST00000557933 VWA1Q6PCB0 445 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 MCRIP2Q9BUT9 160 aaKnown RBP10.18□□□□□ -0.78
LDLR-205ENST00000557933 RPH3ALQ9UNE2 315 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 COL12A1Q99715 3063 aa10.18□□□□□ -0.78
LDLR-205ENST00000557933 ZNF253O75346 499 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 STAG3L2P0CL84 134 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 STAG3L3P0CL85 134 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 COMPP49747 757 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 HINT1P49773 126 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 PMCHL1Q16048 86 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 MORN5Q5VZ52 161 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 ACP7Q6ZNF0 438 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 STPG4Q8N801 248 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 TRIB1Q96RU8 372 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 PTPRZ1P23471 2315 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 ANKRD11Q6UB99 2663 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 H3BTX0 84 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 SIAH2O43255 324 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 CA2P00918 260 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 EIF4EBP1Q13541 118 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 SPATA45Q537H7 98 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 ZNF766Q5HY98 468 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 CIB3Q96Q77 187 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 TXN2Q99757 166 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 TCF19Q9Y242 345 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 ABCA4P78363 2273 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 AKAP13Q12802 2813 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 YPEL1O60688 119 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 BTF3P20290 206 aaKnown RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 PRB3Q04118 309 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 FOXL1Q12952 345 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 EAF1Q96JC9 268 aaPredicted RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 RBM14Q96PK6 669 aaKnown RBP10.17□□□□□ -0.78
LDLR-205ENST00000557933 YPEL2Q96QA6 119 aa10.17□□□□□ -0.78
LDLR-205ENST00000557933 SH2D7A6NKC9 451 aaPredicted RBP10.16□□□□□ -0.78
LDLR-205ENST00000557933 H0Y8G0 127 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 TMEM183BQ1AE95 376 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 ACSF3Q4G176 576 aaPredicted RBP10.16□□□□□ -0.78
LDLR-205ENST00000557933 MIEN1Q9BRT3 115 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 DNAJC4Q9NNZ3 241 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 NRN1Q9NPD7 142 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 DSCAMO60469 2012 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 TMPRSS2O15393 492 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 SPINT2O43291 252 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 CAMPP49913 170 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 GNG4P50150 75 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 LGALS4P56470 323 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 NRN1LQ496H8 165 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 Q6ZN92 141 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 OR10W1Q8NGF6 305 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 TAAR6Q96RI8 345 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 IL36BQ9NZH7 164 aa10.16□□□□□ -0.78
LDLR-205ENST00000557933 IGKV1OR2-108A0A075B7D4 117 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms