RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RTL8BQ17RB0 113 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM241Q24JQ0 296 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM155Q4W5P6 130 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 NCR3LG1Q68D85 454 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 CDPF1Q6NVV7 123 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 KIR2DL5AQ8N109 375 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 OR52E5Q8NH55 327 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 SCGB1C1Q8TD33 95 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 DDB2Q92466 427 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 RAB1CQ92928 201 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 TNFRSF14Q92956 283 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 URGCP-MRPS24S4R325 110 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 RBMXL2O75526 392 aaKnown RBP10.38□□□□□ -0.75
SHMT2-229ENST00000557348 IL3RAP26951 378 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 OR10J1P30954 320 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 ZNF134P52741 427 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 PAX9P55771 341 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 BRWD1-AS2P59051 145 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 PRAMEF5Q5TYX0 476 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 GFI1BQ5VTD9 330 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM200BQ69YZ2 307 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 C11orf71Q6IPW1 123 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 KCNIP4Q6PIL6 250 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 LYG1Q8N1E2 194 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 ZNF596Q8TC21 504 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 BBC3Q96PG8 261 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-229ENST00000557348 PRO1933Q9H354 126 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 ANKHD1Q8IWZ3 2542 aaKnown RBP10.37□□□□□ -0.75
SHMT2-229ENST00000557348 MBP02144 154 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 GNLYP22749 145 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 RAB11AP62491 216 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 POU2AF1Q16633 256 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 ATP6V1FQ16864 119 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 PDLIM3Q53GG5 364 aaPredicted RBP10.37□□□□□ -0.75
SHMT2-229ENST00000557348 RPL39P5Q59GN2 51 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 ZNF787Q6DD87 383 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 OR8B3Q8NGG8 313 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 OR51G1Q8NGK1 321 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 OR4A16Q8NH70 328 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM186Q96B77 213 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 OR8B2Q96RD0 313 aa10.37□□□□□ -0.75
SHMT2-229ENST00000557348 PCNX1Q96RV3 2341 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 TRAV9-1A0A075B6T8 112 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 XKRY2A2RUG3 117 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 PROP1O75360 226 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 KBTBD11O94819 623 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM50AO95807 157 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 APOA2P02652 100 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 DYNLT3P51808 116 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 FAM53AQ6NSI3 398 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-229ENST00000557348 LYPD2Q6UXB3 125 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 ZNF833PQ6ZTB9 187 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 ODF3L1Q8IXM7 274 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 DTD1Q8TEA8 209 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 RBKSQ9H477 322 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 MANBALQ9NQG1 85 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 CTSZQ9UBR2 303 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 KIAA2026Q5HYC2 2103 aa10.36□□□□□ -0.75
SHMT2-229ENST00000557348 H7BYZ3 331 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 CST7O76096 145 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 GNG10P50151 68 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 ZNF137PP52743 207 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 PAFAH1B2P68402 229 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 CACNA1DQ01668 2161 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 ACTL10Q5JWF8 245 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 WDR25Q64LD2 544 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-229ENST00000557348 SLC25A24Q6NUK1 477 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 BOD1L1Q8NFC6 3051 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 OR9G1Q8NH87 305 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 C8orf46Q8TAG6 207 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 NEIL1Q96FI4 390 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-229ENST00000557348 C20orf144Q9BQM9 153 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 TXNDC17Q9BRA2 123 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 PCGF1Q9BSM1 259 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 DSCAMO60469 2012 aa10.35□□□□□ -0.75
SHMT2-229ENST00000557348 SPENQ96T58 3664 aaKnown RBP10.35□□□□□ -0.75
SHMT2-229ENST00000557348 MAP1LC3B2A6NCE7 125 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 CEBPZOSA8MTT3 80 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 DLEU1O43261 78 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 NXPH3O95157 252 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 IAPPP10997 89 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 DLX6P56179 175 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 IZUMO4Q1ZYL8 232 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM249Q2WGJ8 235 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 BSXQ3C1V8 233 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM41BQ5BJD5 291 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM14EPQ6UXP3 125 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 OR10X1Q8NGY0 326 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 OSR1Q8TAX0 266 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-229ENST00000557348 MAP1LC3BQ9GZQ8 125 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 J3QR06 171 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 RPLP1P05386 114 aaKnown RBP10.34□□□□□ -0.75
SHMT2-229ENST00000557348 COL8A2P25067 703 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 SPANXN5Q5MJ07 72 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 THNSL2Q86YJ6 484 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 ZNF295-AS1Q8N0V1 137 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM217Q8N7C4 229 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 SLC35D1Q9NTN3 355 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 TMEM140Q9NV12 185 aa10.34□□□□□ -0.75
SHMT2-229ENST00000557348 FKBP11Q9NYL4 201 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms