RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 DIP2BQ9P265 1576 aa2.73□□□□□ -1.97
PRPF39-210ENST00000556718 PCM1Q15154 2024 aa2.73□□□□□ -1.97
PRPF39-210ENST00000556718 DOCK2Q92608 1830 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 NHSL1Q5SYE7 1610 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 IGKV2D-24A0A075B6R9 120 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 IGHV3-49A0A0A0MS15 119 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CENPVL3A0A0U1RRI6 287 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 A0A1B0GW64 132 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 DAPL1A0PJW8 107 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 C5orf63A6NC05 138 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TMEM235A6NFC5 223 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 IQCF5A8MTL0 148 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ZNF705FA8MVS1 300 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 UMAD1C9J7I0 102 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 F5H5T6 163 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 G3V3Q6 166 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 COCHO43405 550 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 NDUFS5O43920 106 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 OR2J2O76002 312 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TNFSF15O95150 251 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CPSF4O95639 269 aaKnown RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CD74P04233 296 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CTXN2P0C2S0 81 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ZNF705DP0CH99 300 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ZNF705BP0CI00 300 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 HLA-GP17693 338 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 GABRA4P48169 554 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 POLR2HP52434 150 aaKnown RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CAV3P56539 151 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 PPP1CAP62136 330 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 RPL38P63173 70 aaKnown RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 HIST1H3AP68431 136 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 SLC9A3R2Q15599 337 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 SLC25A35Q3KQZ1 300 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 RNASE13Q5GAN3 156 aaKnown RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ACTL10Q5JWF8 245 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TMEM69Q5SWH9 247 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ZNF684Q5T5D7 378 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 MICAL3Q7RTP6 2002 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 SLC36A1Q7Z2H8 476 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 COMMD6Q7Z4G1 85 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 C17orf78Q8N4C9 275 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 OR4K17Q8NGC6 315 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 OR5D18Q8NGL1 313 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 OR51Q1Q8NH59 317 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 LINC01560Q8TB33 94 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ASB17Q8WXJ9 295 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TMEM106AQ96A25 262 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 PPCDCQ96CD2 204 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 STARD4Q96DR4 205 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 RBMXL1Q96E39 390 aaKnown RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CPNE2Q96FN4 548 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TEX37Q96LM6 180 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 CDX2Q99626 313 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 NUDT9Q9BW91 350 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 SNHG12Q9BXW3 62 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TBL1XR1Q9BZK7 514 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 OR2J1Q9GZK6 312 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 SLC25A31Q9H0C2 315 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TCEAL2Q9H3H9 227 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 WFDC1Q9HC57 220 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ACER3Q9NUN7 267 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 NECAP2Q9NVZ3 263 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 TMEM242Q9NWH2 141 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 FKBP11Q9NYL4 201 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 BET1LQ9NYM9 111 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 ZNF230Q9UIE0 474 aaPredicted RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 NXT1Q9UKK6 140 aaKnown RBP2.72□□□□□ -1.97
PRPF39-210ENST00000556718 PCTPQ9UKL6 214 aa2.72□□□□□ -1.97
PRPF39-210ENST00000556718 PAPPAQ13219 1627 aa2.71□□□□□ -1.97
PRPF39-210ENST00000556718 COL24A1Q17RW2 1714 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 ARAP2Q8WZ64 1704 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 SLX4Q8IY92 1834 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 TRAV30A0A087WSZ9 112 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 IGHV3-72A0A0B4J1Y9 119 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 K7EPK0 472 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 CDIPTO14735 213 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 MFSD11O43934 449 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 OR1I1O60431 355 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 PDYNP01213 254 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 APODP05090 189 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 HLA-DQB2P05538 268 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 GZMBP10144 247 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 ADCYAP1P18509 176 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 ATF1P18846 271 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 NPY1RP25929 384 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 P2RY2P41231 377 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 PRLHRP49683 370 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 SULT1A2P50226 295 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 FOXA1P55317 472 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 H2BFSP57053 126 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 FAM3AP98173 230 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 EBPQ15125 230 aaKnown RBP2.71□□□□□ -1.98
PRPF39-210ENST00000556718 OR4D1Q15615 310 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 BSXQ3C1V8 233 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 ACOT6Q3I5F7 207 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-210ENST00000556718 ACSM3Q53FZ2 586 aa2.71□□□□□ -1.98
PRPF39-210ENST00000556718 TNFAIP8L2Q6P589 184 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-210ENST00000556718 ZNF322Q6U7Q0 402 aaPredicted RBP2.71□□□□□ -1.98
PRPF39-210ENST00000556718 SLC25A26Q70HW3 274 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms