RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 PIGPP57054 158 aa15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 SURF2Q15527 256 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 LSM10Q969L4 123 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 EEF1AKMT3Q96AZ1 226 aa15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 CXorf58Q96LI9 332 aa15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 TMEM56Q96MV1 263 aa15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 TRAV3A0A0B4J244 114 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 IGLC7A0M8Q6 106 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 FABP12A6NFH5 140 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 LY86O95711 162 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 S100A5P33763 92 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 H2BFWTQ7Z2G1 175 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 OR9G4Q8NGQ1 327 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 PRRT1Q99946 306 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 C14orf166Q9Y224 244 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 OR51B2Q9Y5P1 312 aa15.83■□□□□ 0.12
CCDC88C-210ENST00000555995 TRBV7-1A0A0A6YYK4 115 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 CGB1A6NKQ9 187 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 C15orf61A6NNL5 157 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 RBMXL2O75526 392 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 CTSDP07339 412 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 MYOD1P15172 320 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 TNFSF8P32971 234 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 GDPD1Q8N9F7 314 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 OR1L6Q8NGR2 347 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 OR4A16Q8NH70 328 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 SEC22AQ96IW7 307 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 FANCD2OSQ96PS1 177 aa15.82■□□□□ 0.12
CCDC88C-210ENST00000555995 IGLV11-55A0A075B6I3 123 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 TEX50A0A1B0GTY4 177 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 SYNJ2BPP57105 145 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 OR4D10Q8NGI6 311 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 OR13C8Q8NGS7 320 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 PRR25Q96S07 402 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 NDUFA4L2Q9NRX3 87 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 TMEM14BQ9NUH8 114 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 SIGLEC8Q9NYZ4 499 aa15.81■□□□□ 0.12
CCDC88C-210ENST00000555995 SORL1Q92673 2214 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 C3orf85A0A1B0GTC6 90 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 BMPR1BO00238 502 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 GGCTO75223 188 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 TRBV12-3P01733 135 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 REG1AP05451 166 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 OR4C16Q8NGL9 310 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 MRGPRFQ96AM1 343 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 SCGB3A2Q96PL1 93 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 B9D2Q9BPU9 175 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 HINT2Q9BX68 163 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 SCP2D1Q9UJQ7 156 aa15.8■□□□□ 0.12
CCDC88C-210ENST00000555995 ANKRD20A5PA0PJZ0 165 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 IGLV1-51P01701 117 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 OR13C7P0DN81 318 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 PI3P19957 117 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 FAUP35544 74 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 MECP2P51608 486 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 AKR1C2P52895 323 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 AP3S2P59780 193 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 CD69Q07108 199 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 MARCH1Q8TCQ1 289 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 RBM38Q9H0Z9 239 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 SLC2A8Q9NY64 477 aa15.79■□□□□ 0.12
CCDC88C-210ENST00000555995 NDUFB8O95169 186 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 ARL3P36405 182 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 TRIM16LQ309B1 348 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 C19orf35Q6ZS72 473 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 ATP6V0BQ99437 205 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 SOSTQ9BQB4 213 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 NSG2Q9Y328 171 aa15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 F11RQ9Y624 299 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-210ENST00000555995 IGKV1-39P01597 117 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 IGKV1D-39P04432 117 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 GP9P14770 177 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 SPNP16150 400 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 UCP1P25874 307 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 WT1-ASQ06250 92 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 FAAP20Q6NZ36 180 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 OR10W1Q8NGF6 305 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 OR2K2Q8NGT1 345 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 VN1R17PQ8TDU5 208 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 DEDD2Q8WXF8 326 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 TP53RKQ96S44 253 aa15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 LSM4Q9Y4Z0 139 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-210ENST00000555995 LGALS9O00182 355 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 PRCDQ00LT1 54 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 FAM106AQ4KMX7 169 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 LCN12Q6JVE5 192 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 CLEC19AQ6UXS0 136 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 FAM219AQ8IW50 185 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 RNASE11Q8TAA1 199 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 RRNAD1Q96FB5 475 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 CCDC140Q96MF4 163 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 PDCD10Q9BUL8 212 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 SMAD5-AS1Q9Y6J3 95 aa15.76■□□□□ 0.11
CCDC88C-210ENST00000555995 TEX13DA0A0J9YY54 714 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 HSPE1P61604 102 aaKnown RBP15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 DHODHQ02127 395 aa15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 PYDC2Q56P42 97 aa15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 SLC25A24Q6NUK1 477 aa15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 GPHB5Q86YW7 130 aa15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 Q8N402 240 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms