RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 A8MWP6 167 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 GABARAPH6UMI1 98 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 KRASP01116 189 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 DEFA4P12838 97 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 RPA2P15927 270 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 PHLDA2Q53GA4 152 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 C19orf35Q6ZS72 473 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 TBC1D26Q86UD7 250 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 LAX1Q8IWV1 398 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 TMEM229BQ8NBD8 167 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 DYNC2LI1Q8TCX1 351 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 VN1R17PQ8TDU5 208 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 LSM10Q969L4 123 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 WWC2-AS2Q96NR7 200 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 U3KQK5 164 aa12.19□□□□□ -0.46
CCDC88C-209ENST00000554872 C15orf61A6NNL5 157 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 M0QYG6 137 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 CTDSPLO15194 276 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 SNAPC5O75971 98 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 CD3DP04234 171 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 IFNA6P05013 189 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 SERPINE2P07093 398 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 G6PCP35575 357 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 RPL5P46777 297 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 WT1-ASQ06250 92 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 ADAMTSL5Q6ZMM2 481 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 CLVS1Q8IUQ0 354 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 OR1L6Q8NGR2 347 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 ZNF502Q8TBZ5 544 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 SEC22AQ96IW7 307 aa12.18□□□□□ -0.46
CCDC88C-209ENST00000554872 PPP5D1E7EU14 171 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 REG1AP05451 166 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 FRMD6-AS1P0C7T7 363 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 ARL3P36405 182 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 TAS2R19P59542 299 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 HAPLN4Q86UW8 402 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 OR10W1Q8NGF6 305 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 SMIM4Q8WVI0 70 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 ZC4H2Q9NQZ6 224 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 C19orf73Q9NVV2 129 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 OR51B2Q9Y5P1 312 aa12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 F11RQ9Y624 299 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-209ENST00000554872 MFSD2BA6NFX1 497 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 C2orf70A6NJV1 201 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 CTDSP2O14595 271 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 B3GALNT1O75752 331 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 IGKV1-39P01597 117 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 IGKV1D-39P04432 117 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 CLEC19AQ6UXS0 136 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 TERB2Q8NHR7 220 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 TMEM56Q96MV1 263 aa12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 TECRQ9NZ01 308 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-209ENST00000554872 RGS5O15539 181 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 OR2C1O95371 312 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 OR13C7P0DN81 318 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 IGHV4-30-4P0DP06 118 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 MEF2DQ14814 521 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 FAM106AQ4KMX7 169 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 STEAP1BQ6NZ63 245 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 SBSPONQ8IVN8 264 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 SGPP2Q8IWX5 399 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 ZNF114Q8NC26 417 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 ZFAND1Q8TCF1 268 aa12.15□□□□□ -0.46
CCDC88C-209ENST00000554872 H3BMQ9 156 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 RAB3DO95716 219 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 P0C879 139 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 FOLR2P14207 255 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 ELLP55199 621 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 PIGPP57054 158 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 SURF2Q15527 256 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 DEFB114Q30KQ6 69 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 H2BFWTQ7Z2G1 175 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 GTSCR1Q86UQ5 136 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 OR4D10Q8NGI6 311 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 OR1P1Q8NH06 330 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 MARC2Q969Z3 335 aa12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 SLIRPQ9GZT3 109 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 NXF2Q9GZY0 626 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-209ENST00000554872 TMEM213A2RRL7 107 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 DBX1A6NMT0 343 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 INS-IGF2F8WCM5 200 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 GSTZ1O43708 216 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 NOL3O60936 208 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 ATG12O94817 140 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 HLA-AP01891 365 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 CLEC3BP05452 202 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 C8orf88P0DMB2 117 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 PGAM2P15259 253 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 FCGR2BP31994 310 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 MFAP2P55001 183 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 PRCDQ00LT1 54 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 CD300EQ496F6 205 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 RNASE12Q5GAN4 147 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 SPSB3Q6PJ21 355 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 CCDC71LQ8N9Z2 235 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 MRGPRFQ96AM1 343 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 ISOC1Q96CN7 298 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 BSCL2Q96G97 398 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 TM2D3Q9BRN9 247 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 ZNF436Q9C0F3 470 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms