RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ZNF140P52738 457 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-210ENST00000552045 KRTAP10-8P60410 259 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 ERVS71-1P61550 626 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 TNFAIP6P98066 277 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-210ENST00000552045 FABP9Q0Z7S8 132 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 SRSF6Q13247 344 aaKnown RBP3.13□□□□□ -1.91
LIMA1-210ENST00000552045 OR1L8Q8NGR8 309 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 PRAP1Q96NZ9 151 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 HSPE1-MOB4S4R3N1 261 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 PRXQ9BXM0 1461 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 MBD5Q9P267 1494 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 CEP152O94986 1710 aa3.13□□□□□ -1.91
LIMA1-210ENST00000552045 SPTBN5Q9NRC6 3674 aaKnown RBP3.12□□□□□ -1.91
LIMA1-210ENST00000552045 MKI67P46013 3256 aaKnown RBP3.12□□□□□ -1.91
LIMA1-210ENST00000552045 PIK3C2AO00443 1686 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 INMT-MINDY4F8WBC2 141 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 G3V3Q6 166 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 NDUFB2O95178 105 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 RWDD2BP57060 319 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 FKBP1AP62942 108 aaKnown RBP3.12□□□□□ -1.91
LIMA1-210ENST00000552045 PSG4Q00888 419 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 SPATA12Q7Z6I5 190 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 LRRC25Q8N386 305 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-210ENST00000552045 PACRGLQ8N7B6 248 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 OR2T4Q8NH00 348 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 SFRP2Q96HF1 295 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 GPR84Q9NQS5 396 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 ZNF337Q9Y3M9 751 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 CASP8AP2Q9UKL3 1982 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 TTC21AQ8NDW8 1320 aa3.12□□□□□ -1.91
LIMA1-210ENST00000552045 NRXN1Q9ULB1 1477 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 COL24A1Q17RW2 1714 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 PKD1L3Q7Z443 1732 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 PEAK1Q9H792 1746 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 TRPM6Q9BX84 2022 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 UBFD1O14562 309 aaKnown RBP3.11□□□□□ -1.91
LIMA1-210ENST00000552045 CTSGP08311 255 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 CD79AP11912 226 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 CPMP14384 443 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 CD200P41217 278 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 SLC22A24Q8N4F4 322 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 CNEP1R1Q8N9A8 125 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 OR5C1Q8NGR4 320 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 SGMS2Q8NHU3 365 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 PAIP2Q9BPZ3 127 aaKnown RBP3.11□□□□□ -1.91
LIMA1-210ENST00000552045 AICDAQ9GZX7 198 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 FAM96AQ9H5X1 160 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 TAAR3PQ9P1P4 343 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 AK3Q9UIJ7 227 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 CDC42BPGQ6DT37 1551 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 NRXN3Q9Y4C0 1643 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 TTC28Q96AY4 2481 aa3.11□□□□□ -1.91
LIMA1-210ENST00000552045 NAIPQ13075 1403 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 FMN2Q9NZ56 1722 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 A0A087WUU8 490 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 VPS37CA5D8V6 355 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-210ENST00000552045 OR5K4A6NMS3 321 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 LST1O00453 97 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 IGHV1-69P01742 117 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 GABRA2P47869 451 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 KRTAP10-10P60014 251 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 TAF9Q16594 264 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 TMPPEQ6ZT21 453 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 SMIM5Q71RC9 77 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 OR52E6Q96RD3 313 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 NMNAT3Q96T66 252 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 TMEM222Q9H0R3 208 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 PRO3102Q9H379 93 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 TXNL4BQ9NX01 149 aaKnown RBP3.1□□□□□ -1.91
LIMA1-210ENST00000552045 ANGPT4Q9Y264 503 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 FLT4P35916 1363 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 CDC42BPAQ5VT25 1732 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 PARP4Q9UKK3 1724 aaKnown RBP3.1□□□□□ -1.91
LIMA1-210ENST00000552045 CASKIN1Q8WXD9 1431 aa3.1□□□□□ -1.91
LIMA1-210ENST00000552045 KIF1AQ12756 1690 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 SMIM9A6NGZ8 99 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 A8MUN3 132 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 FGF6P10767 208 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 RPL27AP46776 148 aaKnown RBP3.09□□□□□ -1.91
LIMA1-210ENST00000552045 RBM11P57052 281 aaKnown RBP3.09□□□□□ -1.91
LIMA1-210ENST00000552045 TAS2R30P59541 319 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 GNA12Q03113 381 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 ACOT6Q3I5F7 207 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-210ENST00000552045 AKIRIN2Q53H80 203 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 TNFAIP8L3Q5GJ75 292 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 C2orf91Q6ZV80 131 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 MINOS1-NBL1R4GNA1 71 aa3.09□□□□□ -1.91
LIMA1-210ENST00000552045 KDM6AO15550 1401 aaPredicted RBP3.09□□□□□ -1.92
LIMA1-210ENST00000552045 NSD3Q9BZ95 1437 aa3.09□□□□□ -1.92
LIMA1-210ENST00000552045 RANBP2P49792 3224 aaKnown RBP3.08□□□□□ -1.92
LIMA1-210ENST00000552045 TRPM1Q7Z4N2 1603 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 EIF2AK4Q9P2K8 1649 aaKnown RBP3.08□□□□□ -1.92
LIMA1-210ENST00000552045 CACNA1BQ00975 2339 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 A0A1B0GW54 56 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 E7EQL1 145 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 FADS1O60427 444 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 GZMBP10144 247 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 OR4D2P58180 307 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 CAV1Q03135 178 aa3.08□□□□□ -1.92
LIMA1-210ENST00000552045 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms