RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 LYPD1Q8N2G4 141 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 ZNF485Q8NCK3 441 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 SCARB1Q8WTV0 552 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 ST8SIA2Q92186 375 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 C21orf62Q9NYP8 219 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 THYN1Q9P016 225 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 KCNK7Q9Y2U2 307 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 PRELID3BQ9Y3B1 194 aa10.22□□□□□ -0.77
VPS29-209ENST00000551655 IGKV1D-8A0A087WSZ0 117 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 J3QL48 77 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 WBP4O75554 376 aaKnown RBP10.21□□□□□ -0.77
VPS29-209ENST00000551655 DFFBO76075 338 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 CTSGP08311 255 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 FCGR1AP12314 374 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 XGP55808 180 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 PAFAH1B2P68402 229 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 DNAL1Q4LDG9 190 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 TMEM41BQ5BJD5 291 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 RBM48Q5RL73 367 aaKnown RBP10.21□□□□□ -0.77
VPS29-209ENST00000551655 TMEM88Q6PEY1 159 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 MFSD4AQ8N468 514 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 OR4S2Q8NH73 311 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 TCTEX1D2Q8WW35 142 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 SLC7A6OSQ96CW6 309 aaPredicted RBP10.21□□□□□ -0.77
VPS29-209ENST00000551655 URM1Q9BTM9 101 aaKnown RBP10.21□□□□□ -0.77
VPS29-209ENST00000551655 MED4Q9NPJ6 270 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 SPATA2Q9UM82 520 aa10.21□□□□□ -0.77
VPS29-209ENST00000551655 RBMX2Q9Y388 322 aaKnown RBP10.21□□□□□ -0.77
VPS29-209ENST00000551655 BPNT1O95861 308 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 DCKP27707 260 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 RPL11P62913 178 aaKnown RBP10.2□□□□□ -0.78
VPS29-209ENST00000551655 TIMM50Q3ZCQ8 353 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 ACTL10Q5JWF8 245 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 UBE2UQ5VVX9 321 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 GDPD1Q8N9F7 314 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 ZNRF2Q8NHG8 242 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 OR10C1Q96KK4 312 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 RNF167Q9H6Y7 350 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 HRASLSQ9HDD0 168 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 SMPD3Q9NY59 655 aaPredicted RBP10.2□□□□□ -0.78
VPS29-209ENST00000551655 RABAC1Q9UI14 185 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 TMED3Q9Y3Q3 217 aa10.2□□□□□ -0.78
VPS29-209ENST00000551655 TRAV14DV4A0A0A6YYC5 116 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 IGKV1D-13A0A0B4J2D9 117 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 K7EIM0 57 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 ST8SIA3O43173 380 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 IGKV1-13P0DP09 117 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 MYL12AP19105 171 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 WT1-ASQ06250 92 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 TTC23Q5W5X9 447 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 ZNF66Q6ZN08 573 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 FAM210BQ96KR6 192 aa10.19□□□□□ -0.78
VPS29-209ENST00000551655 DIMT1Q9UNQ2 313 aaKnown RBP10.19□□□□□ -0.78
VPS29-209ENST00000551655 ZNF688P0C7X2 276 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 SPART-AS1P0CW21 52 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 OR13C7P0DN81 318 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 TAS2R43P59537 309 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 EIF4EBP1Q13541 118 aaPredicted RBP10.18□□□□□ -0.78
VPS29-209ENST00000551655 FRZBQ92765 325 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 DGCR14Q96DF8 476 aaKnown RBP10.18□□□□□ -0.78
VPS29-209ENST00000551655 GFI1Q99684 422 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 ATG101Q9BSB4 218 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 TAS2R8Q9NYW2 309 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 XCL2Q9UBD3 114 aa10.18□□□□□ -0.78
VPS29-209ENST00000551655 CDK1P06493 297 aa10.17□□□□□ -0.78
VPS29-209ENST00000551655 CD37P11049 281 aa10.17□□□□□ -0.78
VPS29-209ENST00000551655 CD36P16671 472 aa10.17□□□□□ -0.78
VPS29-209ENST00000551655 NFYAP23511 347 aaPredicted RBP10.17□□□□□ -0.78
VPS29-209ENST00000551655 MAPK3P27361 379 aaPredicted RBP10.17□□□□□ -0.78
VPS29-209ENST00000551655 CLDN12P56749 244 aa10.17□□□□□ -0.78
VPS29-209ENST00000551655 MRPS15P82914 257 aaKnown RBP10.17□□□□□ -0.78
VPS29-209ENST00000551655 CBR4Q8N4T8 237 aa10.17□□□□□ -0.78
VPS29-209ENST00000551655 BET1LQ9NYM9 111 aa10.17□□□□□ -0.78
VPS29-209ENST00000551655 A0A075B6Q4 140 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 DIRAS3O95661 229 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 HRASP01112 189 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 IGHV3-48P01763 117 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 SMR3BP02814 79 aaPredicted RBP10.16□□□□□ -0.78
VPS29-209ENST00000551655 SERPINE2P07093 398 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 DLK1P80370 383 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 ACSM3Q53FZ2 586 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 FAM222AQ5U5X8 452 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 STXBP6Q8NFX7 210 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 QTRT1Q9BXR0 403 aaKnown RBP10.16□□□□□ -0.78
VPS29-209ENST00000551655 KRTAP1-5Q9BYS1 174 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 COMMD5Q9GZQ3 224 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 VSIRQ9H7M9 311 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 DKK2Q9UBU2 259 aa10.16□□□□□ -0.78
VPS29-209ENST00000551655 LOC100130705A0A1B0GUX0 176 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 K7EQG2 157 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 UPK2O00526 184 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 TNFSF12O43508 249 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 EIF4EP06730 217 aaKnown RBP10.15□□□□□ -0.78
VPS29-209ENST00000551655 GNB3P16520 340 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 FAM3BP58499 235 aaPredicted RBP10.15□□□□□ -0.78
VPS29-209ENST00000551655 RELQ04864 619 aaPredicted RBP10.15□□□□□ -0.78
VPS29-209ENST00000551655 CCDC197Q8NCU1 140 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 OR56B1Q8NGI3 324 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 NIPSNAP3BQ9BS92 247 aa10.15□□□□□ -0.78
VPS29-209ENST00000551655 F11RQ9Y624 299 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms