RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PCSK4Q6UW60 755 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 COLCA1Q6ZS62 124 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 PACRGQ96M98 296 aaPredicted RBP12.51□□□□□ -0.41
CUX1-214ENST00000550008 MPDU1O75352 247 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 OR9G9P0C7N8 305 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 NDFIP1Q9BT67 221 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 SLC25A15Q9Y619 301 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 LOC102723971A0A1B0GUV8 181 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 A0A1B0GV90 55 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 APOBEC3AP31941 199 aaPredicted RBP12.5□□□□□ -0.41
CUX1-214ENST00000550008 PRR30Q53SZ7 412 aaPredicted RBP12.5□□□□□ -0.41
CUX1-214ENST00000550008 PLA2G2CQ5R387 149 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 PQLC2Q6ZP29 291 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 COQ2Q96H96 371 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 FBXL15Q9H469 300 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 CARHSP1Q9Y2V2 147 aaKnown RBP12.5□□□□□ -0.41
CUX1-214ENST00000550008 IGHV3OR16-8A0A075B7F1 116 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 C20orf202A1L168 122 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 SRRM5B3KS81 715 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 MC5RP33032 325 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 IQCJQ1A5X6 159 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 Q6P435 159 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 WDR31Q8NA23 367 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 OR2D3Q8NGH3 330 aa12.5□□□□□ -0.41
CUX1-214ENST00000550008 DKK1O94907 266 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 COL8A1P27658 744 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 ATP5G3P48201 142 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 ARL16Q0P5N6 197 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 SCGB2A2Q13296 93 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 LRTM2Q8N967 370 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 ANAPC16Q96DE5 110 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 KIAA1549LQ6ZVL6 1849 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 DENND4AQ7Z401 1863 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 HYPMO75409 117 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 CFPP27918 469 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 CYB5R2Q6BCY4 276 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 MMD2Q8IY49 270 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 OR1L6Q8NGR2 347 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 TRAV34A0A0B4J273 112 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 HTR1DP28221 377 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 BRS3P32247 399 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 DUTP33316 252 aaKnown RBP12.49□□□□□ -0.41
CUX1-214ENST00000550008 NMSQ5H8A3 153 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 DOLPP1Q86YN1 238 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 GATAD1Q8WUU5 269 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 PERPQ96FX8 193 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 PSMG3Q9BT73 122 aaPredicted RBP12.49□□□□□ -0.41
CUX1-214ENST00000550008 PRUNE2Q8WUY3 3088 aa12.49□□□□□ -0.41
CUX1-214ENST00000550008 A0A1W2PNU3 283 aaPredicted RBP12.48□□□□□ -0.41
CUX1-214ENST00000550008 LY6HO94772 140 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 MYOD1P15172 320 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 KIAA1644Q3SXP7 199 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 C10orf55Q5SWW7 151 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 MYO18BQ8IUG5 2567 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 CCDC168Q8NDH2 2452 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 IGHV3OR16-13A0A075B7E8 117 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 IGHV3-74A0A0B4J1X5 117 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 PGPA6NDG6 321 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 LGALS7P47929 136 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 TPPP2P59282 170 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 ZNF506Q5JVG8 444 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 DTX1Q86Y01 620 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 EIF4E3Q8N5X7 224 aaKnown RBP12.48□□□□□ -0.41
CUX1-214ENST00000550008 OR4C5Q8NGB2 326 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 DMRTA2Q96SC8 542 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 DCAF16Q9NXF7 216 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 ELOVL5Q9NYP7 299 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 B9A039 149 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 SLC31A2O15432 143 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 IL6RP08887 468 aaPredicted RBP12.48□□□□□ -0.41
CUX1-214ENST00000550008 USF1P22415 310 aaPredicted RBP12.48□□□□□ -0.41
CUX1-214ENST00000550008 CDKN1AP38936 164 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 MFAP2P55001 183 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 PKIAP61925 76 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 ZNRD1Q9P1U0 126 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 ARL2-SNX15V9GYD0 113 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 SPTBN4Q9H254 2564 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 DLL1O00548 723 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 NUBP1P53384 320 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 CHRDL1Q9BU40 450 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 GSN-AS1Q9NRJ2 163 aa12.48□□□□□ -0.41
CUX1-214ENST00000550008 TRAV3A0A0B4J244 114 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 PGPEP1LA6NFU8 196 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 LINC00473A8K010 186 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 CGAP01215 116 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 PTTG1IPP53801 180 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 CLEC7AQ9BXN2 247 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 NAGKQ9UJ70 344 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 WISP2O76076 250 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 IGHG3P01860 377 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 NEUROG1Q92886 237 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 NOL4LQ96MY1 436 aaPredicted RBP12.47□□□□□ -0.41
CUX1-214ENST00000550008 KLRB1Q12918 225 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 AARDQ4LEZ3 155 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 CLDND2Q8NHS1 167 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 SSBP3Q9BWW4 388 aaPredicted RBP12.47□□□□□ -0.41
CUX1-214ENST00000550008 ZNF430Q9H8G1 570 aaPredicted RBP12.47□□□□□ -0.41
CUX1-214ENST00000550008 DNAJC4Q9NNZ3 241 aa12.47□□□□□ -0.41
CUX1-214ENST00000550008 SAA1P0DJI8 122 aaPredicted RBP12.46□□□□□ -0.41
CUX1-214ENST00000550008 ASCL4Q6XD76 172 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms