RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TRAPPC2BP0DI82 140 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 OR13C7P0DN81 318 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 LYL1P12980 280 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 CBLN1P23435 193 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 G6PCP35575 357 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 PHLDA2Q53GA4 152 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 LAX1Q8IWV1 398 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 OR1L8Q8NGR8 309 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 WDR89Q96FK6 387 aaPredicted RBP12.32□□□□□ -0.44
VPS29-207ENST00000549970 HINT2Q9BX68 163 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 WFDC10AQ9H1F0 79 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 PALMDQ9NP74 551 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 TECRQ9NZ01 308 aaKnown RBP12.32□□□□□ -0.44
VPS29-207ENST00000549970 THYN1Q9P016 225 aa12.32□□□□□ -0.44
VPS29-207ENST00000549970 FGF2P09038 288 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 ELK1P19419 428 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 WT1-ASQ06250 92 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 ZNF585BQ52M93 769 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 THOC7Q6I9Y2 204 aaKnown RBP12.31□□□□□ -0.44
VPS29-207ENST00000549970 DEFB125Q8N687 156 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 GDPD1Q8N9F7 314 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 ZNF502Q8TBZ5 544 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 CMTM3Q96MX0 182 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 SCPEP1Q9HB40 452 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 CEPT1Q9Y6K0 416 aa12.31□□□□□ -0.44
VPS29-207ENST00000549970 IGHV3-35A0A0C4DH35 117 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 A8MWP6 167 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 SNAPC5O75971 98 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 RCVRNP35243 200 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 RORCP51449 518 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 TM4SF20Q53R12 229 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 RNASE12Q5GAN4 147 aaKnown RBP12.3□□□□□ -0.44
VPS29-207ENST00000549970 ZNF57Q68EA5 555 aaPredicted RBP12.3□□□□□ -0.44
VPS29-207ENST00000549970 SLC25A24Q6NUK1 477 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 PLET1Q6UQ28 207 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 UNQ9165/PRO28630Q6UXU0 137 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 UXS1Q8NBZ7 420 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 ISOC1Q96CN7 298 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 NAA50Q9GZZ1 169 aaKnown RBP12.3□□□□□ -0.44
VPS29-207ENST00000549970 EDA2RQ9HAV5 297 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 NDUFA4L2Q9NRX3 87 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 MLXQ9UH92 298 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 OR51B2Q9Y5P1 312 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 RYR2Q92736 4967 aa12.3□□□□□ -0.44
VPS29-207ENST00000549970 IGHV3-21A0A0B4J1V1 117 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 OR11H12B2RN74 326 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 FAM25AB3EWG3 89 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 FAM25CB3EWG5 89 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 FAM25GB3EWG6 89 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 CYB5BO43169 146 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 SERPINE2P07093 398 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 PTBP1P26599 531 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS29-207ENST00000549970 S100GP29377 79 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 ZFAND6Q6FIF0 208 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 BTNL8Q6UX41 500 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 HSD17B13Q7Z5P4 300 aaPredicted RBP12.29□□□□□ -0.44
VPS29-207ENST00000549970 TBC1D26Q86UD7 250 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 TMEM61Q8N0U2 210 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 LSM10Q969L4 123 aaKnown RBP12.29□□□□□ -0.44
VPS29-207ENST00000549970 SRD5A3Q9H8P0 318 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 RETNQ9HD89 108 aa12.29□□□□□ -0.44
VPS29-207ENST00000549970 CSMD3Q7Z407 3707 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 TGOLN2O43493 480 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 IFNA6P05013 189 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 SMIM18P0DKX4 95 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 LPCAT3Q6P1A2 487 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 LINC00322Q6ZN03 302 aaPredicted RBP12.28□□□□□ -0.44
VPS29-207ENST00000549970 VN1R17PQ8TDU5 208 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 PRNDQ9UKY0 176 aa12.28□□□□□ -0.44
VPS29-207ENST00000549970 F11RQ9Y624 299 aaKnown RBP12.28□□□□□ -0.44
VPS29-207ENST00000549970 LYSTQ99698 3801 aa12.27□□□□□ -0.44
VPS29-207ENST00000549970 RBMY1BA6NDE4 496 aaKnown RBP12.27□□□□□ -0.45
VPS29-207ENST00000549970 RBMY1EA6NEQ0 496 aaKnown RBP12.27□□□□□ -0.45
VPS29-207ENST00000549970 OR2T8A6NH00 312 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 DBX1A6NMT0 343 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 M0QYG6 137 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 SCAF4O95104 1147 aaKnown RBP12.27□□□□□ -0.45
VPS29-207ENST00000549970 RBMY1DP0C7P1 496 aaKnown RBP12.27□□□□□ -0.45
VPS29-207ENST00000549970 MFAP2P55001 183 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 MZT2AQ6P582 158 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 SLC16A13Q7RTY0 426 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 SLC38A6Q8IZM9 456 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 CADM3Q8N126 398 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 FAM110AQ9BQ89 295 aa12.27□□□□□ -0.45
VPS29-207ENST00000549970 C15orf61A6NNL5 157 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 GABARAPO95166 117 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 UCP3P55916 312 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 CTF1Q16619 201 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 OR52B4Q8NGK2 314 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 OR5B3Q8NH48 314 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 AP3S1Q92572 193 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 TMEM56Q96MV1 263 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 TSC22D3Q99576 134 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 ZNF436Q9C0F3 470 aaPredicted RBP12.26□□□□□ -0.45
VPS29-207ENST00000549970 HIPK2Q9H2X6 1198 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 FAM212BQ9NTI7 297 aaPredicted RBP12.26□□□□□ -0.45
VPS29-207ENST00000549970 TMEM14BQ9NUH8 114 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 FKBP11Q9NYL4 201 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 UFC1Q9Y3C8 167 aa12.26□□□□□ -0.45
VPS29-207ENST00000549970 IGKV1-39P01597 117 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms