RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 G6PCP35575 357 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 ZNF134P52741 427 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 LGALS4P56470 323 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 PROK1P58294 105 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 POLR2GP62487 172 aaKnown RBP eCLIP5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 HBG1P69891 147 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 HBG2P69892 147 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 VMA21Q3ZAQ7 101 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 RUSC1-AS1Q66K80 236 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 CCDC144NLQ6NUI1 221 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 C9orf139Q6ZV77 190 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 ZNF680Q8NEM1 530 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 OR4C13Q8NGP0 309 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 OR52E5Q8NH55 327 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 OR4A5Q8NH83 315 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 LINC01006Q8NI28 216 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 SCARB1Q8WTV0 552 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 LHX4Q969G2 390 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 RPEQ96AT9 228 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 FLYWCH2Q96CP2 140 aaKnown RBP5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 SMIM8Q96KF7 97 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 HIPK2Q9H2X6 1198 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 PSENENQ9NZ42 101 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 PRNDQ9UKY0 176 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 WASHC3Q9Y3C0 194 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 WSB1Q9Y6I7 421 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 STAB2Q8WWQ8 2551 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 DSCAML1Q8TD84 2053 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 COL7A1Q02388 2944 aa5.71□□□□□ -1.5
DEPDC4-208ENST00000549341 DYNC2H1Q8NCM8 4307 aaKnown RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 OOSP1A8MZH6 123 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 RAMP3O60896 148 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 TSPAN9O75954 239 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 IFNA5P01569 189 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 IGKV1-39P01597 117 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 OPN1MWP04001 364 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 IGKV1D-39P04432 117 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 ARG1P05089 322 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 FGF2P09038 288 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 CT45A6P0DMU7 189 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 CT45A5P0DMU8 189 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 CT45A7P0DMV0 189 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 OPN1MW2P0DN77 364 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 OPN1MW3P0DN78 364 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 COX7A1P24310 79 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 HTR1DP28221 377 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 LGALS7P47929 136 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 SPCS3P61009 180 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 UBE2KP61086 200 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 RPS16P62249 146 aaKnown RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 ARF6P62330 175 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 RAB11AP62491 216 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 IFITM2Q01629 132 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 TNFRSF9Q07011 255 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 POU2AF1Q16633 256 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 HLA-DRB5Q30154 266 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 CXorf66Q5JRM2 361 aaPredicted RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 MINOS1Q5TGZ0 78 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 FAM53AQ6NSI3 398 aaPredicted RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 SLC25A24Q6NUK1 477 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 BAP18Q8IXM2 172 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 ODF3L1Q8IXM7 274 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 OR8H3Q8N146 312 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 C11orf44Q8N8P7 122 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 OR1S2Q8NGQ3 325 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 STOML3Q8TAV4 291 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 ST8SIA2Q92186 375 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 DDB2Q92466 427 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 C5orf30Q96GV9 206 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 TSNAXQ99598 290 aaKnown RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 RNF5Q99942 180 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 ZNF251Q9BRH9 671 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 SLC25A32Q9H2D1 315 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 LYRM2Q9NU23 88 aaPredicted RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 DPM3Q9P2X0 92 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 HSPB7Q9UBY9 170 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 STRAPQ9Y3F4 350 aaKnown RBP5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 MINOS1-NBL1R4GNA1 71 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 DOCK11Q5JSL3 2073 aa5.7□□□□□ -1.5
DEPDC4-208ENST00000549341 IGHV2-70DA0A0C4DH43 119 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 A0A0G2JRQ6 117 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 C22orf46C9J442 243 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 H0YJW9 148 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 BUB1B-PAK6H3BSN5 160 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 ACTL6BO94805 426 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 SPDEFO95238 335 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 HTR2BP41595 481 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 HOXA1P49639 335 aaPredicted RBP5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 F2RL1P55085 397 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 ATP5IP56385 69 aaPredicted RBP5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 EWSR1Q01844 656 aaKnown RBP eCLIP5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 EXOSC2Q13868 293 aaKnown RBP5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 ATP6V1FQ16864 119 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 TMEM177Q53S58 311 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 SSX9Q7RTT3 188 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 MOB3BQ86TA1 216 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 ZNF429Q86V71 674 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 PDZD9Q8IXQ8 264 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 PNKDQ8N490 385 aa5.69□□□□□ -1.5
DEPDC4-208ENST00000549341 TMEM252Q8N6L7 170 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms