RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RCVRNP35243 200 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 RPL27AP46776 148 aaKnown RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 GUCA2BQ16661 112 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 SMUG1Q53HV7 270 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 SLC25A42Q86VD7 318 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 LAX1Q8IWV1 398 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 TMEM167AQ8TBQ9 72 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 DYNLRB2Q8TF09 96 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 TCTEX1D2Q8WW35 142 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 FYTTD1Q96QD9 318 aaKnown RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 OR2A7Q96R45 310 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 SLIRPQ9GZT3 109 aaKnown RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 C6orf62Q9GZU0 229 aaPredicted RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 SLC2A9Q9NRM0 540 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 TXNL4BQ9NX01 149 aaKnown RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 SLC2A8Q9NY64 477 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 TAS2R8Q9NYW2 309 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 SPATA2Q9UM82 520 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 ZNF257Q9Y2Q1 563 aa6.37□□□□□ -1.39
USP28-215ENST00000545608 MRPS7Q9Y2R9 242 aaKnown RBP6.37□□□□□ -1.39
USP28-215ENST00000545608 CGB1A6NKQ9 187 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 OR11H12B2RN74 326 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 LGALS9O00182 355 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 KBTBD11O94819 623 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 CRYGCP07315 174 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 ZNF735P0CB33 412 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 PTHLHP12272 177 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 IL7P13232 177 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 AREGP15514 252 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 FGF9P31371 208 aaPredicted RBP6.36□□□□□ -1.39
USP28-215ENST00000545608 ETV6P41212 452 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 AP2S1P53680 142 aaPredicted RBP6.36□□□□□ -1.39
USP28-215ENST00000545608 VBP1P61758 197 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 CD300CQ08708 224 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 UBE2UQ5VVX9 321 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 CLEC19AQ6UXS0 136 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 ZNF66Q6ZN08 573 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 SSX9Q7RTT3 188 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 GPHB5Q86YW7 130 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 OR4S2Q8NH73 311 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 LGALS14Q8TCE9 139 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 CACNG8Q8WXS5 425 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 HSD17B10Q99714 261 aaKnown RBP6.36□□□□□ -1.39
USP28-215ENST00000545608 AIFM2Q9BRQ8 373 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 SRD5A3Q9H8P0 318 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 ZC4H2Q9NQZ6 224 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 CCL28Q9NRJ3 127 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 ANXA10Q9UJ72 324 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 RYR2Q92736 4967 aa6.36□□□□□ -1.39
USP28-215ENST00000545608 TNFSF12O43508 249 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 REG1AP05451 166 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 CTRB1P17538 263 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 CBLN1P23435 193 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 PSMB6P28072 239 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 MAS1LP35410 378 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 ARL3P36405 182 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 IFITM3Q01628 133 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 KLK9Q2XQG4 91 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 FAM209BQ5JX69 171 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 CTRB2Q6GPI1 263 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 SFXN4Q6P4A7 337 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 NOXA1Q86UR1 476 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 TPRA1Q86W33 373 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 GVQW1Q8N7I0 195 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 OR5H6Q8NGV6 325 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 OR6F1Q8NGZ6 308 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 VSTM2AQ8TAG5 236 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 NXF2Q9GZY0 626 aaKnown RBP6.35□□□□□ -1.39
USP28-215ENST00000545608 RNF167Q9H6Y7 350 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 TECRQ9NZ01 308 aaKnown RBP6.35□□□□□ -1.39
USP28-215ENST00000545608 KLK9Q9UKQ9 250 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 DNAH7Q8WXX0 4024 aa6.35□□□□□ -1.39
USP28-215ENST00000545608 IGLV11-55A0A075B6I3 123 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 TRAV18A0A075B6X5 111 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 TRAV3A0A0B4J244 114 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 ZNF320A2RRD8 509 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 TMEM213A2RRL7 107 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 MFSD2BA6NFX1 497 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SNAPC5O75971 98 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SCGNO76038 276 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 HRASP01112 189 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 CLEC3BP05452 202 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 FCER2P06734 321 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 HLA-GP17693 338 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 FCGR2CP31995 323 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SDC2P34741 201 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 LSM3P62310 102 aaKnown RBP6.34□□□□□ -1.39
USP28-215ENST00000545608 RPL8P62917 257 aaKnown RBP6.34□□□□□ -1.39
USP28-215ENST00000545608 MXD1Q05195 221 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 ZNF57Q68EA5 555 aaPredicted RBP6.34□□□□□ -1.39
USP28-215ENST00000545608 MZT2BQ6NZ67 158 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SLC51BQ86UW2 128 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 HOGA1Q86XE5 327 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 TMEM61Q8N0U2 210 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 UXS1Q8NBZ7 420 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 BEST4Q8NFU0 473 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SECTM1Q8WVN6 248 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 EEF1AKMT3Q96AZ1 226 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 SLC25A38Q96DW6 304 aa6.34□□□□□ -1.39
USP28-215ENST00000545608 BET1LQ9NYM9 111 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms