RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 MGLLQ99685 303 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 SMR3AQ99954 134 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 ZNF426Q9BUY5 554 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 CDCA4Q9BXL8 241 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 C11orf1Q9H5F2 150 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 NDUFB11Q9NX14 153 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 MRPS16Q9Y3D3 137 aaKnown RBP0.71□□□□□ -2.3
YBX3-214ENST00000544501 ZGRF1Q86YA3 2104 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 LRP2P98164 4655 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 PKHD1L1Q86WI1 4243 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 DNAH5Q8TE73 4624 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 KIF20BQ96Q89 1820 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 TNRC6BQ9UPQ9 1833 aaKnown RBP0.71□□□□□ -2.3
YBX3-214ENST00000544501 CHD3Q12873 2000 aaKnown RBP0.71□□□□□ -2.3
YBX3-214ENST00000544501 FAT3Q8TDW7 4589 aa0.71□□□□□ -2.3
YBX3-214ENST00000544501 KNTC1P50748 2209 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 FAT1Q14517 4588 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 MYH13Q9UKX3 1938 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 A0A0G2JQZ4 141 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LOC100506127A0A0U1RQW1 187 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 IGKV2-29A2NJV5 120 aaPredicted RBP0.7□□□□□ -2.3
YBX3-214ENST00000544501 GRIFINA4D1Z8 144 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LINC00862A6NCI5 91 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 TMEM235A6NFC5 223 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 M0QYV0 167 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 SYNGR1O43759 233 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 CDK14O94921 469 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 TNFAIP8O95379 198 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 SOD1P00441 154 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LIMS3P0CW19 117 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LIMS4P0CW20 117 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 SLC25A16P16260 332 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 CDK2P24941 298 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LCN1P31025 176 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 OPRM1P35372 400 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 CD200P41217 278 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 PSMB3P49720 205 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 FGF12P61328 243 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 ZBTB6Q15916 424 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 Q3ZCU0 254 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 TRMT12Q53H54 448 aaKnown RBP0.7□□□□□ -2.3
YBX3-214ENST00000544501 FKBP1CQ5VVH2 108 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LGALS9CQ6DKI2 356 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 TTC33Q6PID6 262 aaPredicted RBP0.7□□□□□ -2.3
YBX3-214ENST00000544501 RASL11AQ6T310 242 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 ZNF283Q8N7M2 679 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 OR51H1Q8NH63 302 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 SGMS2Q8NHU3 365 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 ZNF563Q8TA94 476 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 CCDC127Q96BQ5 260 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 TAMM41Q96BW9 452 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 MRPS24Q96EL2 167 aaKnown RBP0.7□□□□□ -2.3
YBX3-214ENST00000544501 C19orf60Q96EN9 201 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 SERPINB11Q96P15 392 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 OR52B2Q96RD2 323 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 TBX5Q99593 518 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 MED18Q9BUE0 208 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 C16orf95Q9H693 158 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 UBQLN4Q9NRR5 601 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 AGPAT3Q9NRZ7 376 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LINC00527Q9UJ94 153 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 LAMA4Q16363 1823 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 SPEF2Q9C093 1822 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 ZFC3H1O60293 1989 aaKnown RBP0.7□□□□□ -2.3
YBX3-214ENST00000544501 APOBP04114 4563 aaKnown RBP0.7□□□□□ -2.3
YBX3-214ENST00000544501 LRP1BQ9NZR2 4599 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 USH2AO75445 5202 aa0.7□□□□□ -2.3
YBX3-214ENST00000544501 CLUHO75153 1309 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 EVC2Q86UK5 1308 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 IGHV3-15A0A0B4J1V0 119 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 ARRDC5A6NEK1 342 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 ZNF879B4DU55 563 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 SULT1C2O00338 296 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 LIN7AO14910 233 aaPredicted RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 GPX1P07203 203 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 TPM1P09493 284 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 CD7P09564 240 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 SLC35E2BP0CK96 405 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 PRB4P10163 310 aaPredicted RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 ESDP10768 282 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 COX6B1P14854 86 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 NPPCP23582 126 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 PPP1CCP36873 323 aaKnown RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 PI4KAP42356 2102 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 CDK9P50750 372 aaKnown RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 TSPEAR-AS2P59090 65 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 FKBP1AP62942 108 aaKnown RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 XRCC4Q13426 336 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 Q6ZSA8 131 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 DOLPP1Q86YN1 238 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 SELENOHQ8IZQ5 122 aaKnown RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 FNDC9Q8TBE3 224 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 ZNF75CPQ92670 426 aaPredicted RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 ZNF625Q96I27 306 aaPredicted RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 GPR22Q99680 433 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 PECRQ9BY49 303 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 METTL17Q9H7H0 456 aaPredicted RBP0.69□□□□□ -2.3
YBX3-214ENST00000544501 PRO2289Q9P1D8 64 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 ENPP5Q9UJA9 477 aa0.69□□□□□ -2.3
YBX3-214ENST00000544501 HHLA2Q9UM44 414 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms