RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RRP15Q9Y3B9 282 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 UFC1Q9Y3C8 167 aa11.4□□□□□ -0.58
CLSTN3-213ENST00000541953 RBFOX2O43251 390 aaKnown RBP eCLIP11.39□□□□□ -0.592e-6■■■■□ 25.7
CLSTN3-213ENST00000541953 RYR1P21817 5038 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 TAS2R31P59538 309 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 FXYD4P59646 89 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 PRR20EP86478 221 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 PRR20CP86479 221 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 PRR20DP86480 221 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 PRR20BP86481 221 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 PRR20AP86496 221 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 GDPD1Q8N9F7 314 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 OR5B3Q8NH48 314 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 OR51H1Q8NH63 302 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 OR4A5Q8NH83 315 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 SLC5A7Q9GZV3 580 aa11.39□□□□□ -0.59
CLSTN3-213ENST00000541953 TRAV18A0A075B6X5 111 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 TEX50A0A1B0GTY4 177 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 MEIS3P1A6NDR6 274 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 CTSDP07339 412 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 OR13C7P0DN81 318 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 ARPC4P59998 168 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 IZUMO2Q6UXV1 221 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 TMEM17Q86X19 198 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 PHLDA1Q8WV24 401 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 C20orf24Q9BUV8 137 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 QTRT1Q9BXR0 403 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 MAP6D1Q9H9H5 199 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 DAZ1Q9NQZ3 744 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 NSG2Q9Y328 171 aa11.38□□□□□ -0.59
CLSTN3-213ENST00000541953 IGHV3-49A0A0A0MS15 119 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 DBX1A6NMT0 343 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 K7EIM0 57 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 HPRT1P00492 218 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 SERPINE2P07093 398 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 NQO2P16083 231 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 FGF9P31371 208 aaPredicted RBP11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 NANOS2P60321 138 aaKnown RBP11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 MXD1Q05195 221 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 MSMO1Q15800 293 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 UBE2UQ5VVX9 321 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 HOGA1Q86XE5 327 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 SLC38A6Q8IZM9 456 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 VN1R17PQ8TDU5 208 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 SCARB1Q8WTV0 552 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 COMMD5Q9GZQ3 224 aa11.37□□□□□ -0.59
CLSTN3-213ENST00000541953 KIR2DL5BA0A0G2JN68 375 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 KIR2DL5BA0A0G2JPC4 375 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 ATF4P18848 351 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 PSMB9P28065 219 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 SDC2P34741 201 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 SLC25A24Q6NUK1 477 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 KIR2DL5AQ8N109 375 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 STPG3Q8N7X2 389 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 DMBX1Q8NFW5 382 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 KIR2DL5BQ8NHK3 375 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 RNF2Q99496 336 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 NDUFA4L2Q9NRX3 87 aa11.36□□□□□ -0.59
CLSTN3-213ENST00000541953 PKD1P98161 4303 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 NDUFA4O00483 81 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 UBE2CO00762 179 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 TRAPPC2P0DI81 140 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 TRAPPC2BP0DI82 140 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 GNRHRP30968 328 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 TFPI2P48307 235 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 AADACL3Q5VUY0 350 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 SPARTQ8N0X7 666 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 UBAC2Q8NBM4 344 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 CD300LFQ8TDQ1 290 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 BSCL2Q96G97 398 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 SRSF8Q9BRL6 282 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 HINT2Q9BX68 163 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 PLEKHA2Q9HB19 425 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 C21orf62Q9NYP8 219 aa11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 KLK5Q9Y337 293 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 F11RQ9Y624 299 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-213ENST00000541953 DNAH11Q96DT5 4516 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 IGKV3-7A0A075B6H7 116 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 IGHV3OR16-13A0A075B7E8 117 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 IGHV3-74A0A0B4J1X5 117 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 DEFB4AO15263 64 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 RLN1P04808 185 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 CATR1Q13166 79 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 LGALS9CQ6DKI2 356 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 ZBTB34Q8NCN2 500 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 FCAMRQ8WWV6 532 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 GALNT14Q96FL9 552 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 AUNIPQ9H7T9 357 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 THYN1Q9P016 225 aa11.34□□□□□ -0.59
CLSTN3-213ENST00000541953 OR4C46A6NHA9 309 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 MARCH11A6NNE9 402 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 CHEK1O14757 476 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 SCGNO76038 276 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 IGHV3-48P01763 117 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 CTSGP08311 255 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 FXYD6Q9H0Q3 95 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 COMMD9Q9P000 198 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 SMPXQ9UHP9 88 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 BLOC1S6Q9UL45 172 aa11.33□□□□□ -0.6
CLSTN3-213ENST00000541953 ERICH4A6NGS2 130 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms