RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ACTR3CQ9C0K3 210 aaPredicted RBP11.23□□□□□ -0.61
RTN3-210ENST00000540798 LSM4Q9Y4Z0 139 aaKnown RBP11.23□□□□□ -0.61
RTN3-210ENST00000540798 IFITM10A6NMD0 228 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 ADORA2A-AS1P86434 159 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 LINC01560Q8TB33 94 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 OR51B2Q9Y5P1 312 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 MAP1BP46821 2468 aaKnown RBP11.23□□□□□ -0.61
RTN3-210ENST00000540798 A0A1W2PPH5 198 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 H0YJW9 148 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 GRNP28799 593 aaKnown RBP11.22□□□□□ -0.61
RTN3-210ENST00000540798 TAGLN2P37802 199 aaKnown RBP11.22□□□□□ -0.61
RTN3-210ENST00000540798 OPRK1P41145 380 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 RAB11AP62491 216 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 OSR1Q8TAX0 266 aaPredicted RBP11.22□□□□□ -0.61
RTN3-210ENST00000540798 RAB1CQ92928 201 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 ST6GALNAC6Q969X2 333 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 NIPSNAP3BQ9BS92 247 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 MRPL20Q9BYC9 149 aaKnown RBP11.22□□□□□ -0.61
RTN3-210ENST00000540798 TMPRSS5Q9H3S3 457 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 SLC25A22Q9H936 323 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 A0A1W2PPE2 198 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 FNDC10F2Z333 226 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 CCL21O00585 134 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 CD81P60033 236 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 PRCDQ00LT1 54 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 HNF4GQ14541 408 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 ACOT6Q3I5F7 207 aaPredicted RBP11.22□□□□□ -0.61
RTN3-210ENST00000540798 TMEM177Q53S58 311 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 SLC24A4Q8NFF2 622 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 RAB24Q969Q5 203 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 MALSU1Q96EH3 234 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 MGST2Q99735 147 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 TMEM204Q9BSN7 226 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 FAM90A27PA6NNH2 459 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 IGHV2-5P01817 119 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 COTL1Q14019 142 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 BSXQ3C1V8 233 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 C11orf42Q8N5U0 333 aa11.22□□□□□ -0.61
RTN3-210ENST00000540798 POLEQ07864 2286 aa11.21□□□□□ -0.61
RTN3-210ENST00000540798 J3QR06 171 aa11.21□□□□□ -0.61
RTN3-210ENST00000540798 EREGO14944 169 aa11.21□□□□□ -0.61
RTN3-210ENST00000540798 ZNF672Q499Z4 452 aaPredicted RBP11.21□□□□□ -0.61
RTN3-210ENST00000540798 MANBALQ9NQG1 85 aa11.21□□□□□ -0.61
RTN3-210ENST00000540798 B4DEV8 164 aa11.21□□□□□ -0.62
RTN3-210ENST00000540798 CYB5BO43169 146 aa11.21□□□□□ -0.62
RTN3-210ENST00000540798 NPY1RP25929 384 aa11.21□□□□□ -0.62
RTN3-210ENST00000540798 CDSNQ15517 529 aa11.21□□□□□ -0.62
RTN3-210ENST00000540798 ARSJQ5FYB0 599 aaPredicted RBP11.21□□□□□ -0.62
RTN3-210ENST00000540798 H1FXQ92522 213 aaKnown RBP11.21□□□□□ -0.62
RTN3-210ENST00000540798 GGTLC1Q9BX51 225 aa11.21□□□□□ -0.62
RTN3-210ENST00000540798 KBTBD11O94819 623 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 SAA1P0DJI8 122 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 MYOD1P15172 320 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 AGAP20933 346 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 CEBPGP53567 150 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 MEF2BQ02080 365 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 PNRC1Q12796 327 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 WDR25Q64LD2 544 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 ETFRF1Q6IPR1 90 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 TMEM186Q96B77 213 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 TEX50A0A1B0GTY4 177 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 CA2P00918 260 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 ZNF25P17030 456 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 ATP5IP56385 69 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 NABP2Q9BQ15 211 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 NPVFQ9HCQ7 196 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 SIRT7Q9NRC8 400 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 FKBP11Q9NYL4 201 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 ACACBO00763 2458 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 INS-IGF2F8WCM5 200 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 APOA2P02652 100 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 RAB5AP20339 215 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 CDC34P49427 236 aaPredicted RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 NUTF2P61970 127 aaKnown RBP11.2□□□□□ -0.62
RTN3-210ENST00000540798 MUC15Q8N387 334 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 OR10D4PQ8NGN7 298 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 OR5B3Q8NH48 314 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 SDF2L1Q9HCN8 221 aa11.2□□□□□ -0.62
RTN3-210ENST00000540798 TMEM250H0YL14 139 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 OR2C1O95371 312 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 PPOXP50336 477 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 ZNF841Q6ZN19 808 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 PCGF1Q9BSM1 259 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 AP4M1O00189 453 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 NPSP0C0P6 89 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 IGHV1-8P0DP01 117 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 PDPNQ86YL7 162 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 FAM24BQ8N5W8 94 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 C2orf88Q9BSF0 95 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 ENY2Q9NPA8 101 aa11.19□□□□□ -0.62
RTN3-210ENST00000540798 HMGB3O15347 200 aaKnown RBP11.18□□□□□ -0.62
RTN3-210ENST00000540798 PSMB3P49720 205 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 GCSAMLQ5JQS6 135 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 OR4A5Q8NH83 315 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 OR9G1Q8NH87 305 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 PLEKHA3Q9HB20 300 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 TMEM242Q9NWH2 141 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 IGF2RP11717 2491 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 C2orf83Q53S99 150 aa11.18□□□□□ -0.62
RTN3-210ENST00000540798 KCNIP2Q9NS61 270 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms