RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CT45A3Q8NHU0 189 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 GATAD1Q8WUU5 269 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 CORO2AQ92828 525 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 MISP3Q96FF7 219 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 OR4C12Q96R67 309 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 MAP1LC3BQ9GZQ8 125 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 LINC00574Q9H8X3 128 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 PCNX1Q96RV3 2341 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 ZZEF1O43149 2961 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 ADGRG4Q8IZF6 3080 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.82□□□□□ -1
CLIP1-210ENST00000538120 TMEM178BH3BS89 294 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 RAB29O14966 203 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 MMP23AO75900 390 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 PLAUP00749 431 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 LRRC75BQ2VPJ9 315 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 TMEM183AQ8IXX5 376 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 RPUSD4Q96CM3 377 aaKnown RBP8.82□□□□□ -1
CLIP1-210ENST00000538120 SMIM7Q9BQ49 75 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 SAP30LQ9HAJ7 183 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 HSPB7Q9UBY9 170 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 VAX2Q9UIW0 290 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 PITPNC1Q9UKF7 332 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 DYSFO75923 2080 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 RAI1Q7Z5J4 1906 aaPredicted RBP8.82□□□□□ -1
CLIP1-210ENST00000538120 TRGV10A0A0A0MS01 117 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 UBE2L5PA0A1B0GUS4 154 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 LRRC30A6NM36 301 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 FAM90A26D6RGX4 464 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 PFN1P07737 140 aaKnown RBP8.81□□□□□ -1
CLIP1-210ENST00000538120 CHRNB4P30926 498 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 TNFRSF9Q07011 255 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 OR8G2PQ6IF36 304 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 ZNF664Q8N3J9 261 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 ZNF439Q8NDP4 499 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 LAMP3Q9UQV4 416 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 SPTBN4Q9H254 2564 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 M0R1X1 148 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 CLEC3BP05452 202 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 DEFA4P12838 97 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 HOXB4P17483 251 aaPredicted RBP8.81□□□□□ -1
CLIP1-210ENST00000538120 RPS16P62249 146 aaKnown RBP8.81□□□□□ -1
CLIP1-210ENST00000538120 JOSD1Q15040 202 aaPredicted RBP8.81□□□□□ -1
CLIP1-210ENST00000538120 WDR61Q9GZS3 305 aaKnown RBP8.81□□□□□ -1
CLIP1-210ENST00000538120 POLEQ07864 2286 aa8.81□□□□□ -1
CLIP1-210ENST00000538120 TMPRSS2O15393 492 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 PAX1P15863 534 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 APOBEC3AP31941 199 aaPredicted RBP8.8□□□□□ -1
CLIP1-210ENST00000538120 EFNB3Q15768 340 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 TMEM41BQ5BJD5 291 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 OR1P1Q8NH06 330 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 OR5R1Q8NH85 324 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 DDB2Q92466 427 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 LHX4Q969G2 390 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 P2RX4Q99571 388 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 PCGF1Q9BSM1 259 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 PSMG3Q9BT73 122 aaPredicted RBP8.8□□□□□ -1
CLIP1-210ENST00000538120 SRD5A3Q9H8P0 318 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 SLC25A22Q9H936 323 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.8□□□□□ -1
CLIP1-210ENST00000538120 TMEM106BQ9NUM4 274 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 IDI2-AS1Q9NZ38 188 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 PPIAL4EA0A075B759 164 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 TRAV38-1A0A0B4J264 116 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 ZNF705GA8MUZ8 300 aaPredicted RBP8.8□□□□□ -1
CLIP1-210ENST00000538120 PPIAL4DF5H284 164 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 TCAPO15273 167 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 FCGR3BO75015 233 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 CD3EP07766 207 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 PPIAL4FP0DN26 164 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 RPL23P62829 140 aaKnown RBP8.8□□□□□ -1
CLIP1-210ENST00000538120 ACSM6Q6P461 480 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 LYPD2Q6UXB3 125 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 TMEM14EPQ6UXP3 125 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 OR51G1Q8NGK1 321 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 CCL17Q92583 94 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 TAF15Q92804 592 aaKnown RBP eCLIP8.8□□□□□ -1
CLIP1-210ENST00000538120 SLC39A9Q9NUM3 307 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 PPIAL4AQ9Y536 164 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 KALRNO60229 2985 aa8.8□□□□□ -1
CLIP1-210ENST00000538120 DIDO1Q9BTC0 2240 aaKnown RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 A0A1W2PPQ1 181 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 A8MWP6 167 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 OR9G9P0C7N8 305 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 SERF2P84101 59 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 SRSF2Q01130 221 aaKnown RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 MEF2BQ02080 365 aaPredicted RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 TMEM241Q24JQ0 296 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 DNLZQ5SXM8 178 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 PRAMEF5Q5TYX0 476 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 CYB5R2Q6BCY4 276 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 ETFRF1Q6IPR1 90 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 H2BFWTQ7Z2G1 175 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 TMEM37Q8WXS4 190 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 R3HDM4Q96D70 268 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 PERPQ96FX8 193 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 CTDSP1Q9GZU7 261 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 PRORYQ9H606 182 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 SLC25A10Q9UBX3 287 aaPredicted RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 NAT8Q9UHE5 227 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms