RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 IGHV3-21A0A0B4J1V1 117 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 OR2T8A6NH00 312 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 PGLYRP1O75594 196 aaPredicted RBP6.29□□□□□ -1.4
USP28-203ENST00000537490 ATP6V1G2O95670 118 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 SERPINE2P07093 398 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 TRAPPC2P0DI81 140 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 TRAPPC2BP0DI82 140 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 OR13C7P0DN81 318 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 TGFBR1P36897 503 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 LPAR6P43657 344 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 CBX5P45973 191 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 RFX2P48378 723 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 EWSR1Q01844 656 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP28-203ENST00000537490 WT1-ASQ06250 92 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 SLC25A24Q6NUK1 477 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 DHRS11Q6UWP2 260 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 RBPMS2Q6ZRY4 209 aaKnown RBP6.29□□□□□ -1.4
USP28-203ENST00000537490 OR2C3Q8N628 320 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 GDPD1Q8N9F7 314 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 CD300LFQ8TDQ1 290 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 VN1R17PQ8TDU5 208 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 TMEM190Q8WZ59 177 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 CHRDL1Q9BU40 450 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 QTRT1Q9BXR0 403 aaKnown RBP6.29□□□□□ -1.4
USP28-203ENST00000537490 C5orf66Q9H5L9 145 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 COMMD9Q9P000 198 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 THYN1Q9P016 225 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 UBQLN2Q9UHD9 624 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 NSG2Q9Y328 171 aa6.29□□□□□ -1.4
USP28-203ENST00000537490 EPPK1P58107 5090 aaKnown RBP6.29□□□□□ -1.4
USP28-203ENST00000537490 IGHV3OR16-8A0A075B7F1 116 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 F8W735 103 aaPredicted RBP6.28□□□□□ -1.4
USP28-203ENST00000537490 XRCC3O43542 346 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 PMP2P02689 132 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 RLN1P04808 185 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 FGF2P09038 288 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 F2RP25116 425 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 HERV-K104P61576 105 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 NEDD8Q15843 81 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 THOC7Q6I9Y2 204 aaKnown RBP6.28□□□□□ -1.4
USP28-203ENST00000537490 SLC38A6Q8IZM9 456 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 OR1L8Q8NGR8 309 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 SCARB1Q8WTV0 552 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 FCAMRQ8WWV6 532 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 MOB3AQ96BX8 217 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 ZNF414Q96IQ9 312 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 SPAG8Q99932 426 aaPredicted RBP6.28□□□□□ -1.4
USP28-203ENST00000537490 ZNF2Q9BSG1 426 aaPredicted RBP6.28□□□□□ -1.4
USP28-203ENST00000537490 HINT2Q9BX68 163 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 Q9H521 79 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 NDUFA4L2Q9NRX3 87 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 EHFQ9NZC4 300 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 ANAPC10Q9UM13 185 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 F11RQ9Y624 299 aaKnown RBP6.28□□□□□ -1.4
USP28-203ENST00000537490 BIRC6Q9NR09 4857 aa6.28□□□□□ -1.4
USP28-203ENST00000537490 A0A0J9YWU9 116 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 DBX1A6NMT0 343 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 MARCH11A6NNE9 402 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 K7EIM0 57 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 NDUFA4O00483 81 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 TSPAN4O14817 238 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 SPRY2O43597 315 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 ZNF207O43670 478 aaKnown RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 KRASP01116 189 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 NAT1P18440 290 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 ADMP35318 185 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 G6PCP35575 357 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 RPS19P39019 145 aaKnown RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 ERVK-16P61578 105 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 PMS2P11Q13670 270 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 ODF3L2Q3SX64 289 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 HSD17B13Q7Z5P4 300 aaPredicted RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 WFDC3Q8IUB2 231 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 LINC00476Q8WZB0 136 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 LSM10Q969L4 123 aaKnown RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 DGCR14Q96DF8 476 aaKnown RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 S100A16Q96FQ6 103 aaKnown RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 BSCL2Q96G97 398 aaPredicted RBP6.27□□□□□ -1.41
USP28-203ENST00000537490 IFT46Q9NQC8 304 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 C21orf62Q9NYP8 219 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 OR51B2Q9Y5P1 312 aa6.27□□□□□ -1.41
USP28-203ENST00000537490 CXorf65A6NEN9 183 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 K7EMT4 169 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 CYB5BO43169 146 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 TMEM127O75204 238 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 SNAPC5O75971 98 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 CTSDP07339 412 aaPredicted RBP6.26□□□□□ -1.41
USP28-203ENST00000537490 CTSGP08311 255 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 RPL35AP18077 110 aaKnown RBP6.26□□□□□ -1.41
USP28-203ENST00000537490 BMI1P35226 326 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 APOC4P55056 127 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 TAS2R20P59543 309 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 PRR20EP86478 221 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 PRR20CP86479 221 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 PRR20DP86480 221 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 PRR20BP86481 221 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 PRR20AP86496 221 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 TNFRSF9Q07011 255 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 DEFB135Q30KP9 77 aa6.26□□□□□ -1.41
USP28-203ENST00000537490 UBE2NLQ5JXB2 153 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms