RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 TRAPPC2P0DI81 140 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 TRAPPC2BP0DI82 140 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 OR13C7P0DN81 318 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 PTBP1P26599 531 aaKnown RBP eCLIP10.45□□□□□ -0.74
SYNE1-235ENST00000537033 ELLP55199 621 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-235ENST00000537033 GDPD1Q8N9F7 314 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 OR1L6Q8NGR2 347 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 OR5H2Q8NGV7 314 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 VN1R17PQ8TDU5 208 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 VCX3AQ9NNX9 186 aa10.45□□□□□ -0.74
SYNE1-235ENST00000537033 MRPL27Q9P0M9 148 aaKnown RBP10.45□□□□□ -0.74
SYNE1-235ENST00000537033 LOC102724200A0A096LPH7 203 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-235ENST00000537033 TGOLN2O43493 480 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 SNAPC5O75971 98 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 RPA2P15927 270 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 F2RP25116 425 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 S100GP29377 79 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 GNRHRP30968 328 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 RFX2P48378 723 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 ZNF585BQ52M93 769 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 UNQ9165/PRO28630Q6UXU0 137 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 SLC38A6Q8IZM9 456 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 SAMD12Q8N8I0 201 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 OR10W1Q8NGF6 305 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 OR1L8Q8NGR8 309 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 MOB3AQ96BX8 217 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 ZNF2Q9BSG1 426 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-235ENST00000537033 HINT2Q9BX68 163 aa10.44□□□□□ -0.74
SYNE1-235ENST00000537033 DYNC2H1Q8NCM8 4307 aaKnown RBP10.44□□□□□ -0.74
SYNE1-235ENST00000537033 IGHV3-35A0A0C4DH35 117 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 PMP2P02689 132 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 SERPINE2P07093 398 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 C8orf88P0DMB2 117 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 TAS2R20P59543 309 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 SLC25A24Q6NUK1 477 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 DHRS11Q6UWP2 260 aa10.43□□□□□ -0.74
SYNE1-235ENST00000537033 LSM10Q969L4 123 aaKnown RBP10.43□□□□□ -0.74
SYNE1-235ENST00000537033 DGCR14Q96DF8 476 aaKnown RBP10.43□□□□□ -0.74
SYNE1-235ENST00000537033 BSCL2Q96G97 398 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-235ENST00000537033 ZNF436Q9C0F3 470 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-235ENST00000537033 TEX50A0A1B0GTY4 177 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 OR2T8A6NH00 312 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 PGLYRP1O75594 196 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-235ENST00000537033 KRASP01116 189 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 PRSS3P35030 304 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 LPAR6P43657 344 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 WT1-ASQ06250 92 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 LAMTOR1Q6IAA8 161 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 SPSB3Q6PJ21 355 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 OR2C3Q8N628 320 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 OR6F1Q8NGZ6 308 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 TMEM190Q8WZ59 177 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 TMEM56Q96MV1 263 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 ATP6V0BQ99437 205 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 SPAG8Q99932 426 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-235ENST00000537033 C5orf66Q9H5L9 145 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 DAZ1Q9NQZ3 744 aaKnown RBP10.42□□□□□ -0.74
SYNE1-235ENST00000537033 FKBP11Q9NYL4 201 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 PRNDQ9UKY0 176 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 ANAPC10Q9UM13 185 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 OR51B2Q9Y5P1 312 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 F11RQ9Y624 299 aaKnown RBP10.42□□□□□ -0.74
SYNE1-235ENST00000537033 CSMD3Q7Z407 3707 aa10.42□□□□□ -0.74
SYNE1-235ENST00000537033 GPR31O00270 319 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 G6PCP35575 357 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 APOC4P55056 127 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 CADM3Q8N126 398 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 UBAC2Q8NBM4 344 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 FCAMRQ8WWV6 532 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 TSC22D3Q99576 134 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 C20orf24Q9BUV8 137 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 FXYD6Q9H0Q3 95 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 NDUFA4L2Q9NRX3 87 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 C21orf62Q9NYP8 219 aa10.41□□□□□ -0.74
SYNE1-235ENST00000537033 SMIM31A0A1B0GVY4 71 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 NDUFA4O00483 81 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 NAT1P18440 290 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 HRH1P35367 487 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 TGFBR1P36897 503 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 RPS19P39019 145 aaKnown RBP10.4□□□□□ -0.74
SYNE1-235ENST00000537033 TSPAN5P62079 268 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 LSM3P62310 102 aaKnown RBP10.4□□□□□ -0.74
SYNE1-235ENST00000537033 Q56UQ5 140 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 LPCAT3Q6P1A2 487 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 OR5B3Q8NH48 314 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 NSG2Q9Y328 171 aa10.4□□□□□ -0.74
SYNE1-235ENST00000537033 A0A087WXM4 84 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 IGHV3-21A0A0B4J1V1 117 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 OR4C46A6NHA9 309 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 TSPAN4O14817 238 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 HLA-DMAP28067 261 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 PHLDA2Q53GA4 152 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 SCARB1Q8WTV0 552 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 SLC25A46Q96AG3 418 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 OVOL2Q9BRP0 275 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 UBQLN2Q9UHD9 624 aa10.39□□□□□ -0.75
SYNE1-235ENST00000537033 C15orf61A6NNL5 157 aa10.38□□□□□ -0.75
SYNE1-235ENST00000537033 RELQ04864 619 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-235ENST00000537033 OR4A16Q8NH70 328 aa10.38□□□□□ -0.75
SYNE1-235ENST00000537033 YIPF6Q96EC8 236 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms