RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 S100GP29377 79 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 SNRPEP62304 92 aaKnown RBP6.64□□□□□ -1.35
NEDD8-207ENST00000533242 RPL23AP62750 156 aaKnown RBP6.64□□□□□ -1.35
NEDD8-207ENST00000533242 LTC4SQ16873 150 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 SOHLH1Q5JUK2 328 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 AKR1C8PQ5T2L2 129 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF645Q8N7E2 425 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 GALMQ96C23 342 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 GNPNAT1Q96EK6 184 aaPredicted RBP6.64□□□□□ -1.35
NEDD8-207ENST00000533242 OR4C12Q96R67 309 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 PBDC1Q9BVG4 233 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 LIN7CQ9NUP9 197 aaKnown RBP6.64□□□□□ -1.35
NEDD8-207ENST00000533242 COA4Q9NYJ1 87 aa6.64□□□□□ -1.35
NEDD8-207ENST00000533242 A0A0U1RQK1 487 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 ODAMA1E959 279 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 H3BQ15 152 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 ST8SIA5O15466 376 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 OPN1MWP04001 364 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 OPN1MW2P0DN77 364 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 OPN1MW3P0DN78 364 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 DEFA4P12838 97 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 LOXL3P58215 753 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 UBE2KP61086 200 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 OR8G2PQ6IF36 304 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF343Q6P1L6 599 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 LCN15Q6UWW0 184 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 LFNGQ8NES3 379 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 LHX4Q969G2 390 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 RBKSQ9H477 322 aa6.63□□□□□ -1.35
NEDD8-207ENST00000533242 IGHV3OR15-7A0A075B7D8 119 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF98A6NK75 572 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 ACAA1P09110 424 aaPredicted RBP6.62□□□□□ -1.35
NEDD8-207ENST00000533242 CD200P41217 278 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 ELLP55199 621 aaPredicted RBP6.62□□□□□ -1.35
NEDD8-207ENST00000533242 OR2B8PP59922 312 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 TNFRSF9Q07011 255 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 EDDM3AQ14507 147 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF506Q5JVG8 444 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 SLC35E4Q6ICL7 350 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 MRAPQ8TCY5 172 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 RCC1LQ96I51 464 aaKnown RBP6.62□□□□□ -1.35
NEDD8-207ENST00000533242 AGMATQ9BSE5 352 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 BIN3Q9NQY0 253 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 GNG13Q9P2W3 67 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 CTSZQ9UBR2 303 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 IGKV1D-17A0A075B6S4 117 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 UBE2L5PA0A1B0GUS4 154 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 BTBD17A6NE02 478 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 OOEPA6NGQ2 149 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 C15orf65H3BRN8 121 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 HMGB3O15347 200 aaKnown RBP6.62□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF737O75373 536 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 DFFBO76075 338 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 MT-ND4LP03901 98 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 SELLP14151 372 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 RAB5AP20339 215 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 HOXA1P49639 335 aaPredicted RBP6.62□□□□□ -1.35
NEDD8-207ENST00000533242 RHEBQ15382 184 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 LRRC75BQ2VPJ9 315 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 SLC25A24Q6NUK1 477 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 TMEM14EPQ6UXP3 125 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 LRRC29Q8WV35 223 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 KCNIP1Q9NZI2 227 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 VPREB3Q9UKI3 123 aa6.62□□□□□ -1.35
NEDD8-207ENST00000533242 LOC102723971A0A1B0GUV8 181 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 C5orf52A6NGY3 159 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 ZFP92A6NM28 416 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 PMS2P5A8MQ11 134 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 IFNA5P01569 189 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 PRB2P02812 416 aaPredicted RBP6.61□□□□□ -1.35
NEDD8-207ENST00000533242 Q3ZCU0 254 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 FAM90A2PQ658T7 463 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 DUX4L9Q6RFH8 374 aaPredicted RBP6.61□□□□□ -1.35
NEDD8-207ENST00000533242 TCTEX1D2Q8WW35 142 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 C12orf57Q99622 126 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 WDR61Q9GZS3 305 aaKnown RBP6.61□□□□□ -1.35
NEDD8-207ENST00000533242 HIPK2Q9H2X6 1198 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 TUBA4BQ9H853 241 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 RNF7Q9UBF6 113 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 HSPB7Q9UBY9 170 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 PSG11Q9UQ72 335 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 HSPB1P04792 205 aaKnown RBP6.61□□□□□ -1.35
NEDD8-207ENST00000533242 CXCL1P09341 107 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 ERVFRD-1P60508 538 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 RAB2AP61019 212 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 DLK1P80370 383 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 SLC38A11Q08AI6 406 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 NCR3LG1Q68D85 454 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 ACSM6Q6P461 480 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 ZNF429Q86V71 674 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 LILRB2Q8N423 598 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 RPP25LQ8N5L8 163 aaKnown RBP6.61□□□□□ -1.35
NEDD8-207ENST00000533242 GCSAMQ8N6F7 178 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 ZNRF1Q8ND25 227 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 ZNRD1Q9P1U0 126 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 URGCP-MRPS24S4R325 110 aa6.61□□□□□ -1.35
NEDD8-207ENST00000533242 DSCAML1Q8TD84 2053 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 TRAV1-1A0A0B4J248 108 aa6.6□□□□□ -1.35
NEDD8-207ENST00000533242 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.6□□□□□ -1.35
NEDD8-207ENST00000533242 PRDX2P32119 198 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms