RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 DENND4CQ5VZ89 1909 aa4.52□□□□□ -1.69
CD44-236ENST00000533222 HEATR5AQ86XA9 2040 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 COL11A1P12107 1806 aaPredicted RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 M0R2P5 195 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 FCN1O00602 326 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 UQCRQO14949 82 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 LDB3O75112 727 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 SERF1AO75920 110 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 NDUFA7O95182 113 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 RENP00797 406 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 CA1P00915 261 aaPredicted RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 CA2P00918 260 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 COX8AP10176 69 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 RPL7P18124 248 aaKnown RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 EDNRAP25101 427 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 IL3RAP26951 378 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 FABP6P51161 128 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 CRYBA2P53672 197 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 CLDN6P56747 220 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 MYBPHQ13203 477 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 PPP1R1AQ13522 171 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 ATXN7L3Q14CW9 347 aaPredicted RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 SPANXN4Q5MJ08 99 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 FAM69BQ5VUD6 431 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 OR4C11Q6IEV9 310 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 FBXL22Q6P050 247 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 Q6ZVH6 145 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 ASCL5Q7RTU5 278 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 SPATA12Q7Z6I5 190 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 ZFP62Q8NB50 900 aaPredicted RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 ACER1Q8TDN7 264 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 APOBEC4Q8WW27 367 aaKnown RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 PPDPFLQ8WWR9 84 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 CRYGNQ8WXF5 182 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 ARPC1AQ92747 370 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 NEURL3Q96EH8 262 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 SEC22AQ96IW7 307 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 LINC01587Q99440 93 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 KIR2DL4Q99706 377 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 HSD17B10Q99714 261 aaKnown RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 SRSF8Q9BRL6 282 aaKnown RBP4.51□□□□□ -1.69
CD44-236ENST00000533222 C19orf24Q9BVV8 132 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 PLEKHF2Q9H8W4 249 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 SCRT2Q9NQ03 307 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 ALKBH4Q9NXW9 302 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 HIGD1BQ9P298 99 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 LAMTOR3Q9UHA4 124 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 TP53TG3Q9ULZ0 132 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 OR2W1Q9Y3N9 320 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 LY96Q9Y6Y9 160 aa4.51□□□□□ -1.69
CD44-236ENST00000533222 TICRRQ7Z2Z1 1910 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 COL2A1P02458 1487 aaPredicted RBP4.5□□□□□ -1.69
CD44-236ENST00000533222 PLXNA3P51805 1871 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 PLXNA4Q9HCM2 1894 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 ZNF850A8MQ14 1090 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 SHISA9B4DS77 424 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 OVOL3O00110 214 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 ZIC3O60481 467 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 FCGR3BO75015 233 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 MYOD1P15172 320 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 KRTDAPP60985 99 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TMEM258P61165 79 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 RPS14P62263 151 aaKnown RBP4.5□□□□□ -1.69
CD44-236ENST00000533222 RPL23P62829 140 aaKnown RBP4.5□□□□□ -1.69
CD44-236ENST00000533222 MRPS21P82921 87 aaKnown RBP4.5□□□□□ -1.69
CD44-236ENST00000533222 RRN3P1Q2M238 152 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 RPEL1Q2QD12 228 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 CEACAM16Q2WEN9 425 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 Q499Y3 187 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 LRRC37A5PQ49AS3 106 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 ZNF324BQ6AW86 544 aaPredicted RBP4.5□□□□□ -1.69
CD44-236ENST00000533222 CD164L2Q6UWJ8 174 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 Q6ZT83 130 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 OOSP2Q86WS3 158 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 HOGA1Q86XE5 327 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 BAGE3Q86Y29 109 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 BAGE2Q86Y30 109 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 BPIFA4PQ86YQ2 179 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TMEM123Q8N131 208 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 SLC22A18ASQ8N1D0 253 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TMEM86AQ8N2M4 240 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TMEM86BQ8N661 226 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 LRTM2Q8N967 370 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TEX45Q8NA69 505 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 OR4C13Q8NGP0 309 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 ZNF563Q8TA94 476 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 BAALCQ8WXS3 180 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TMEM190Q8WZ59 177 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 MSI2Q96DH6 328 aaKnown RBP4.5□□□□□ -1.69
CD44-236ENST00000533222 LINC00526Q96FQ7 95 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 SFXN3Q9BWM7 321 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 ULBP3Q9BZM4 244 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 PRSS22Q9GZN4 317 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 PBOV1Q9GZY1 135 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 NAA60Q9H7X0 242 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 TAAR3PQ9P1P4 343 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 ANAPC10Q9UM13 185 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 LOC285556D6RIA3 1793 aa4.5□□□□□ -1.69
CD44-236ENST00000533222 C1orf226A1L170 272 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 TMEM89A2RUT3 159 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms