RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 DEFB113Q30KQ7 82 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 DNAL1Q4LDG9 190 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 TIMM23BQ5SRD1 257 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OGFRL1Q5TC84 451 aaPredicted RBP1.41□□□□□ -2.18
CD44-233ENST00000531141 NXNL2Q5VZ03 156 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 HBMQ6B0K9 141 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 NIPAL1Q6NVV3 410 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 NOXRED1Q6NXP6 359 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 Q6ZT83 130 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 FAM19A1Q7Z5A9 133 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 MARCH3Q86UD3 253 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 FUNDC1Q8IVP5 155 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 BOD1L2Q8IYS8 172 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 SPICQ8N5J4 248 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 TMEM156Q8N614 296 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 TMEM251Q8N6I4 163 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 FER1L6-AS1Q8NA97 138 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OR5L1Q8NGL2 311 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OR4K13Q8NH42 304 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 CDC26Q8NHZ8 85 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 NELFBQ8WX92 580 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OLFM3Q96PB7 478 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 C9orf16Q9BUW7 83 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 ULBP1Q9BZM6 244 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 CXCL16Q9H2A7 254 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OR51V1Q9H2C8 321 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 BOLA2Q9H3K6 86 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 FBXL12Q9NXK8 326 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 ZNF337Q9Y3M9 751 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 PLXNA2O75051 1894 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 MYH10P35580 1976 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 ANK3Q12955 4377 aaKnown RBP1.4□□□□□ -2.18
CD44-233ENST00000531141 TENM2Q9NT68 2774 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 H3BP45 60 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 GPR171O14626 319 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 CDIPTO14735 213 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 FABP7O15540 132 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 HPGDSO60760 199 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 OR5F1O95221 314 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 NSA2O95478 260 aaKnown RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 CTXN2P0C2S0 81 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 RD3LP0DJH9 198 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 C8orf88P0DMB2 117 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 SLC2A1P11166 492 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 NQO1P15559 274 aaKnown RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 GZMHP20718 246 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 F8A1P23610 371 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 SLCO1A2P46721 670 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 NKX2-5P52952 324 aaPredicted RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 RAB8AP61006 207 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 VBP1P61758 197 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 B2MP61769 119 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 ARF6P62330 175 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 REEP5Q00765 189 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 RAB31Q13636 194 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 MMDQ15546 238 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 ZCWPW2Q504Y3 356 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 SPIN4Q56A73 249 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 LPCAT4Q643R3 524 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 TTC33Q6PID6 262 aaPredicted RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 DRAM2Q6UX65 266 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 STX12Q86Y82 276 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 C10orf107Q8IVU9 208 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 LRRC34Q8IZ02 419 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 Q8N402 240 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 C3orf56Q8N813 242 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 FDCSPQ8NFU4 85 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 OR8G5Q8NG78 346 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 OR4K17Q8NGC6 315 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 MFSD8Q8NHS3 518 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 SPPL2BQ8TCT7 592 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 DYNC2LI1Q8TCX1 351 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 RNASEH2CQ8TDP1 164 aaKnown RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 LMX1AQ8TE12 382 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 CASTOR1Q8WTX7 329 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 RMND5BQ96G75 393 aaPredicted RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 LINC01587Q99440 93 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 B9D2Q9BPU9 175 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 DDA1Q9BW61 102 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 UGT2B28Q9BY64 529 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 TUBA4BQ9H853 241 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 HRASLSQ9HDD0 168 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 FGFR1OP2Q9NVK5 253 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 BABAM2Q9NXR7 383 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 COMMD9Q9P000 198 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 VPREB3Q9UKI3 123 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 SLC22A13Q9Y226 551 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 SNX24Q9Y343 169 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 POLR3HQ9Y535 204 aaPredicted RBP1.4□□□□□ -2.19
CD44-233ENST00000531141 SORL1Q92673 2214 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 PTPRJQ12913 1337 aa1.4□□□□□ -2.19
CD44-233ENST00000531141 COL7A1Q02388 2944 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 OBSL1O75147 1896 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 HERC1Q15751 4861 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 USF3Q68DE3 2245 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 TRGV4A0A0C4DH28 118 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 ARGFXA6NJG6 315 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 C10orf142B7Z368 130 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 PHYHO14832 338 aa1.39□□□□□ -2.19
CD44-233ENST00000531141 FGF16O43320 207 aa1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms