RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SCAF4O95104 1147 aaKnown RBP8.48□□□□□ -1.05
VPS28-214ENST00000531032 CLEC3BP05452 202 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 PRSS3P35030 304 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 TAS2R31P59538 309 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 TM4SF20Q53R12 229 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 MZT2AQ6P582 158 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 OR51H1Q8NH63 302 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 AP3S1Q92572 193 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 OVOL2Q9BRP0 275 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 HRASLSQ9HDD0 168 aa8.48□□□□□ -1.05
VPS28-214ENST00000531032 TRAV3A0A0B4J244 114 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 SULT1C2O00338 296 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 UPK2O00526 184 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 HPRT1P00492 218 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 PMP2P02689 132 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 EIF4EP06730 217 aaKnown RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 NQO2P16083 231 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 PTBP1P26599 531 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS28-214ENST00000531032 S100GP29377 79 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 GPR183P32249 361 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 RORCP51449 518 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 ELLP55199 621 aaPredicted RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 ERVK-16P61578 105 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 SNX29P2Q8IUI4 249 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 ZNF2Q9BSG1 426 aaPredicted RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 MRPS26Q9BYN8 205 aaKnown RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 ZNF436Q9C0F3 470 aaPredicted RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 MRPL27Q9P0M9 148 aaKnown RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 UFC1Q9Y3C8 167 aa8.47□□□□□ -1.05
VPS28-214ENST00000531032 PLECQ15149 4684 aaKnown RBP8.47□□□□□ -1.05
VPS28-214ENST00000531032 GABARAPO95166 117 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 APOA1P02647 267 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 ZNF585BQ52M93 769 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 THOC7Q6I9Y2 204 aaKnown RBP8.46□□□□□ -1.06
VPS28-214ENST00000531032 PLET1Q6UQ28 207 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 ZNF818PQ6ZRF7 136 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 RBPMS2Q6ZRY4 209 aaKnown RBP8.46□□□□□ -1.06
VPS28-214ENST00000531032 GPR141Q7Z602 305 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 WFDC3Q8IUB2 231 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 GDPD1Q8N9F7 314 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 DMBX1Q8NFW5 382 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 OR1L6Q8NGR2 347 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 CD300LFQ8TDQ1 290 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 VN1R17PQ8TDU5 208 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 GIMAP1Q8WWP7 306 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 TMEM190Q8WZ59 177 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 QTRT1Q9BXR0 403 aaKnown RBP8.46□□□□□ -1.06
VPS28-214ENST00000531032 COMMD5Q9GZQ3 224 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 C5orf66Q9H5L9 145 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 PLEKHA2Q9HB19 425 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 TMEM140Q9NV12 185 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 COMMD9Q9P000 198 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 THYN1Q9P016 225 aa8.46□□□□□ -1.06
VPS28-214ENST00000531032 IGHV3-35A0A0C4DH35 117 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 TGOLN2O43493 480 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 HPGDSO60760 199 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 S1PR2O95136 353 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 RLN1P04808 185 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 HLA-DMAP28067 261 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 RCVRNP35243 200 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 HRH1P35367 487 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 RFX2P48378 723 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 TSPAN5P62079 268 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 RNASE12Q5GAN4 147 aaKnown RBP8.45□□□□□ -1.06
VPS28-214ENST00000531032 GPR107Q5VW38 600 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 HSD17B13Q7Z5P4 300 aaPredicted RBP8.45□□□□□ -1.06
VPS28-214ENST00000531032 CMTM1Q8IZ96 169 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 OR10W1Q8NGF6 305 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 OR6F1Q8NGZ6 308 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 LINC00476Q8WZB0 136 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 MOB3AQ96BX8 217 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 CMTM3Q96MX0 182 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 SPAG8Q99932 426 aaPredicted RBP8.45□□□□□ -1.06
VPS28-214ENST00000531032 SCPEP1Q9HB40 452 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 ANAPC10Q9UM13 185 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 TP53TG1Q9Y2A0 90 aa8.45□□□□□ -1.06
VPS28-214ENST00000531032 ALMS1Q8TCU4 4167 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 TSPAN4O14817 238 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 CYB5BO43169 146 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 NOL3O60936 208 aaKnown RBP8.44□□□□□ -1.06
VPS28-214ENST00000531032 SERPINE2P07093 398 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 GNRHRP30968 328 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 ALDH3B2P48448 385 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 WT1-ASQ06250 92 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 Q6ZWC4 215 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 SLC38A6Q8IZM9 456 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 OR2C3Q8N628 320 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 BSCL2Q96G97 398 aaPredicted RBP8.44□□□□□ -1.06
VPS28-214ENST00000531032 ATP6V0BQ99437 205 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 NAA50Q9GZZ1 169 aaKnown RBP8.44□□□□□ -1.06
VPS28-214ENST00000531032 FXYD6Q9H0Q3 95 aa8.44□□□□□ -1.06
VPS28-214ENST00000531032 DAZ1Q9NQZ3 744 aaKnown RBP8.44□□□□□ -1.06
VPS28-214ENST00000531032 TEX50A0A1B0GTY4 177 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 OR2T8A6NH00 312 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 MARCH11A6NNE9 402 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 GPR31O00270 319 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 TRAPPC2P0DI81 140 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 TRAPPC2BP0DI82 140 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 OR13C7P0DN81 318 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 ZNF182P17025 639 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms