RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 IGHV1-69P01742 117 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 CRYGBP07316 175 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 METTL15P1P0C7V9 234 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 DYNLT3P51808 116 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 TMEM267Q0VDI3 215 aaPredicted RBP16.99■□□□□ 0.31
VPS28-212ENST00000530836 EBI3Q14213 229 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 ALKAL2Q6UX46 152 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 TMEM217Q8N7C4 229 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 PINX1Q96BK5 328 aaKnown RBP16.99■□□□□ 0.31
VPS28-212ENST00000530836 BSCL2Q96G97 398 aaPredicted RBP16.99■□□□□ 0.31
VPS28-212ENST00000530836 RITA1Q96K30 269 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 ATP5SQ99766 215 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 WNK2Q9Y3S1 2297 aa16.99■□□□□ 0.31
VPS28-212ENST00000530836 A0A1W2PN81 502 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 CHRNA7P36544 502 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 F2RL1P55085 397 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 ATP6V1FQ16864 119 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 SPINK9Q5DT21 86 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 THNSL2Q86YJ6 484 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 MRPL41Q8IXM3 137 aaKnown RBP16.98■□□□□ 0.31
VPS28-212ENST00000530836 NPBQ8NG41 125 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 OR10P1Q8NGE3 313 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 OR4C12Q96R67 309 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 ARV1Q9H2C2 271 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 ZNF430Q9H8G1 570 aaPredicted RBP16.98■□□□□ 0.31
VPS28-212ENST00000530836 SIGLEC9Q9Y336 463 aa16.98■□□□□ 0.31
VPS28-212ENST00000530836 ACTL6BO94805 426 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 IFNA10P01566 189 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 IGKV1D-33P01593 117 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 IGKV1-33P01594 117 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 FAM106CPP0CH98 169 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 RAB11AP62491 216 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 PRSS8Q16651 343 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 PPP1R27Q86WC6 154 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 WFDC1Q9HC57 220 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 NDUFA4L2Q9NRX3 87 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 KIAA1456Q9P272 454 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 CDC42EP3Q9UKI2 254 aa16.97■□□□□ 0.31
VPS28-212ENST00000530836 NIPBLQ6KC79 2804 aaeCLIP16.97■□□□□ 0.31
VPS28-212ENST00000530836 FN1P02751 2386 aaKnown RBP16.97■□□□□ 0.31
VPS28-212ENST00000530836 RRHO14718 337 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 HTR2BP41595 481 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 CLINT1Q14677 625 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 LRRC20Q8TCA0 184 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 RBMXL1Q96E39 390 aaKnown RBP16.96■□□□□ 0.31
VPS28-212ENST00000530836 AJUBAQ96IF1 538 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 EAF1Q96JC9 268 aaPredicted RBP16.96■□□□□ 0.31
VPS28-212ENST00000530836 GINS3Q9BRX5 216 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 SLC25A32Q9H2D1 315 aa16.96■□□□□ 0.31
VPS28-212ENST00000530836 METTL1Q9UBP6 276 aaKnown RBP16.96■□□□□ 0.31
VPS28-212ENST00000530836 NBR2O15453 112 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 NDUFA3O95167 84 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 IFNA5P01569 189 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 SNRNP70P08621 437 aaKnown RBP16.96■□□□□ 0.3
VPS28-212ENST00000530836 OR8U8P0C7N1 319 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 HNF1AP20823 631 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 HES1Q14469 280 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 MMDQ15546 238 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 CLLU1Q5K131 121 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 DYNAPQ8N1N2 210 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 LILRB2Q8N423 598 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 PIP4P2Q8N4L2 257 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 HINT2Q9BX68 163 aa16.96■□□□□ 0.3
VPS28-212ENST00000530836 TRAV40A0A0B4J280 105 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 C15orf62A8K5M9 175 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 CRLF1O75462 422 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 BPIFB3P59826 476 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 ERHP84090 104 aaKnown RBP16.95■□□□□ 0.3
VPS28-212ENST00000530836 SLC38A11Q08AI6 406 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 TEX29Q8N6K0 151 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 SLC24A4Q8NFF2 622 aa16.95■□□□□ 0.3
VPS28-212ENST00000530836 PARD6GQ9BYG4 376 aaPredicted RBP16.95■□□□□ 0.3
VPS28-212ENST00000530836 SEC11BP0C7V7 166 aa16.94■□□□□ 0.3
VPS28-212ENST00000530836 PLGLAQ15195 96 aa16.94■□□□□ 0.3
VPS28-212ENST00000530836 OR8G2PQ6IF36 304 aa16.94■□□□□ 0.3
VPS28-212ENST00000530836 IL17RELQ6ZVW7 336 aa16.94■□□□□ 0.3
VPS28-212ENST00000530836 C17orf50Q8WW18 174 aa16.94■□□□□ 0.3
VPS28-212ENST00000530836 GGACTQ9BVM4 153 aa16.94■□□□□ 0.3
VPS28-212ENST00000530836 PMS2P5A8MQ11 134 aa16.93■□□□□ 0.3
VPS28-212ENST00000530836 NPY1RP25929 384 aa16.93■□□□□ 0.3
VPS28-212ENST00000530836 CNTFRP26992 372 aa16.93■□□□□ 0.3
VPS28-212ENST00000530836 Q8N6K4 173 aa16.93■□□□□ 0.3
VPS28-212ENST00000530836 GNPNAT1Q96EK6 184 aaPredicted RBP16.93■□□□□ 0.3
VPS28-212ENST00000530836 C1RLQ9NZP8 487 aa16.93■□□□□ 0.3
VPS28-212ENST00000530836 ARL16Q0P5N6 197 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 MRGPRG-AS1Q2M3A8 158 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 HSD17B13Q7Z5P4 300 aaPredicted RBP16.92■□□□□ 0.3
VPS28-212ENST00000530836 HAPLN4Q86UW8 402 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 NANPQ8TBE9 248 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 RNF141Q8WVD5 230 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 SRSF8Q9BRL6 282 aaKnown RBP16.92■□□□□ 0.3
VPS28-212ENST00000530836 MEGF9Q9H1U4 602 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 OPN1MWP04001 364 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 OPN1MW2P0DN77 364 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 OPN1MW3P0DN78 364 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 SPP1P10451 314 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 MYOD1P15172 320 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 TMEM11P17152 192 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 SNCAP37840 140 aa16.92■□□□□ 0.3
VPS28-212ENST00000530836 RPL27AP46776 148 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms