RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 BTBD17A6NE02 478 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 NCBP2LA6PVI3 153 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 CLDN34H7C241 214 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 SLC25A17O43808 307 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 SAA1P0DJI8 122 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 CXCL3P19876 107 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 HSPE1P61604 102 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 RPL8P62917 257 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 FCN2Q15485 313 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 MMDQ15546 238 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 PRSS8Q16651 343 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 IAH1Q2TAA2 248 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 KRTAP24-1Q3LI83 254 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 PDLIM3Q53GG5 364 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 C19orf54Q5BKX5 351 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 THOC7Q6I9Y2 204 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 SSX9Q7RTT3 188 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 FOXRED2Q8IWF2 684 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 VKORC1L1Q8N0U8 176 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 FAM71E2Q8N5Q1 922 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 SIGLECL1Q8N7X8 197 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 Q8N9W7 124 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 OR11H7Q8NGC8 314 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 OR5M8Q8NGP6 311 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 OR5B3Q8NH48 314 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 RNASE11Q8TAA1 199 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 ZNF418Q8TF45 676 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 FYTTD1Q96QD9 318 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 RASL11BQ9BPW5 248 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 SLC25A33Q9BSK2 321 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 ZNF436Q9C0F3 470 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 RANBP3Q9H6Z4 567 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 TMEM14BQ9NUH8 114 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 TMEM140Q9NV12 185 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 MGAT4CQ9UBM8 478 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 METTL1Q9UBP6 276 aaKnown RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 PRNDQ9UKY0 176 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 FOXA2Q9Y261 457 aaPredicted RBP5.87□□□□□ -1.47
CD44-228ENST00000528455 TNCP24821 2201 aa5.87□□□□□ -1.47
CD44-228ENST00000528455 TET2Q6N021 2002 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 TRAV3A0A0B4J244 114 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 A0A0G2JRQ6 117 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 MPTX1A8MV57 137 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 FAM25EA8MYX2 175 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 FCN1O00602 326 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 GOSR2O14653 212 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 ST8SIA3O43173 380 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 HOXA3O43365 443 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 MED6O75586 246 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 ACTL6BO94805 426 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 IGHV4-59P01825 116 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 HLA-DRB1P01911 266 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 RLN2P04090 185 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 GIPP09681 153 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 OR9G9P0C7N8 305 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 CNTFRP26992 372 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 NKX2-1P43699 371 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 ATP5IP56385 69 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 H2BFSP57053 126 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 SPCS3P61009 180 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 RAP2BP61225 183 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 RPL15P61313 204 aaKnown RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 FGL1Q08830 312 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 ODF1Q14990 250 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 MRGPRG-AS1Q2M3A8 158 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 ZBTB8BQ8NAP8 495 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 OR4D5Q8NGN0 318 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 OR1L8Q8NGR8 309 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 SRSF8Q9BRL6 282 aaKnown RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 C19orf24Q9BVV8 132 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 KRTAP9-9Q9BYP9 154 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 KRTAP9-4Q9BYQ2 154 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 COMMD5Q9GZQ3 224 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 FBXL15Q9H469 300 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 ZNF430Q9H8G1 570 aaPredicted RBP5.86□□□□□ -1.47
CD44-228ENST00000528455 GSKIPQ9P0R6 139 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 HSPB7Q9UBY9 170 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 CACNG5Q9UF02 275 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 VPREB3Q9UKI3 123 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 PLXNB1O43157 2135 aa5.86□□□□□ -1.47
CD44-228ENST00000528455 MDFIC2A0A1B0GVS7 189 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 C15orf61A6NNL5 157 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 INS-IGF2F8WCM5 200 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 RBMXL2O75526 392 aaKnown RBP5.85□□□□□ -1.47
CD44-228ENST00000528455 CCNKO75909 580 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 SIX6O95475 246 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 IFNA17P01571 189 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 IGHG2P01859 326 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 AMY1AP04745 511 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 PSMB6P28072 239 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 COMPP49747 757 aaPredicted RBP5.85□□□□□ -1.47
CD44-228ENST00000528455 CX3CL1P78423 397 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 TNFRSF9Q07011 255 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 PJVKQ0ZLH3 352 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 PLGLAQ15195 96 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 LY6EQ16553 131 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 IZUMO4Q1ZYL8 232 aa5.85□□□□□ -1.47
CD44-228ENST00000528455 CXorf66Q5JRM2 361 aaPredicted RBP5.85□□□□□ -1.47
CD44-228ENST00000528455 HSD17B13Q7Z5P4 300 aaPredicted RBP5.85□□□□□ -1.47
CD44-228ENST00000528455 C5orf56Q8N8D9 126 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms