RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 NKX6-3A6NJ46 265 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 LRRC30A6NM36 301 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CEACAM18A8MTB9 384 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SNRPGP15A8MWD9 76 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 C12orf77C9JDV5 145 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 K7N7A8 449 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 HSD17B6O14756 317 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ARPC5O15511 151 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CREBL2O60519 120 aaPredicted RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 NDUFS7O75251 213 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 HSBP1O75506 76 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 FCN3O75636 299 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PPYP01298 95 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 HLA-AP01891 365 aaKnown RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 HBZP02008 142 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CTSDP07339 412 aaPredicted RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 CSN3P07498 182 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 TRAPPC2P0DI81 140 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 TRAPPC2BP0DI82 140 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ZNF728P0DKX0 622 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SULT1A3P0DMM9 295 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SULT1A4P0DMN0 295 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PPIAL4FP0DN26 164 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 IGHV3-43DP0DP04 118 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PMCHP20382 165 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ZBTB25P24278 435 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 LMO1P25800 156 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PAX6P26367 422 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SSTR5P35346 364 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 KIR2DS4P43632 304 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 IER3P46695 156 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PPOXP50336 477 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 FGF8P55075 233 aaPredicted RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 EDDM3BP56851 147 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 RAB2AP61019 212 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 UBE2KP61086 200 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SUPT4H1P63272 117 aaKnown RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 GAGE2BQ13066 116 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 GNMTQ14749 295 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 KIR2DS1Q14954 304 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 HMGN3Q15651 99 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 POU2AF1Q16633 256 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 LTC4SQ16873 150 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 GAGE2EQ4V326 116 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ABCA11PQ4W5N1 156 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PHLDA2Q53GA4 152 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PDZD11Q5EBL8 140 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 C6orf226Q5I0X4 101 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 GCSAMLQ5JQS6 135 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 AVPI1Q5T686 147 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 TEX36Q5VZQ5 186 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 IGFL4Q6B9Z1 124 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CYB5R2Q6BCY4 276 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SLC35E4Q6ICL7 350 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 GAGE2AQ6NT46 116 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 LYPD2Q6UXB3 125 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ZNF788Q6ZQV5 615 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 LYG2Q86SG7 212 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 LDLRAD3Q86YD5 345 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 PUSL1Q8N0Z8 303 aaKnown RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 GAPTQ8N292 157 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 C12orf45Q8N5I9 185 aaPredicted RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 OR2AK2Q8NG84 335 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 OR10V1Q8NGI7 309 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 OR4A4PQ8NGN8 299 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 OR13A1Q8NGR1 328 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 RFESDQ8TAC1 157 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ZNF431Q8TF32 576 aaPredicted RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 SECTM1Q8WVN6 248 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 MOB3AQ96BX8 217 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SDSLQ96GA7 329 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 FAM210BQ96KR6 192 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ATG101Q9BSB4 218 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CABLES2Q9BTV7 478 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 RSG1Q9BU20 258 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 TRAF4Q9BUZ4 470 aaPredicted RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 ZNF747Q9BV97 191 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CHIAQ9BZP6 476 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 SLA2Q9H6Q3 261 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ZNF665Q9H7R5 613 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 CBLN4Q9NTU7 201 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 KCNIP1Q9NZI2 227 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 GAGE2DQ9UEU5 116 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 C14orf166Q9Y224 244 aaKnown RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 CSDC2Q9Y534 153 aaKnown RBP3.4□□□□□ -1.87
CD44-226ENST00000527889 PPIAL4AQ9Y536 164 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ZNF469Q96JG9 3925 aaPredicted RBP3.39□□□□□ -1.87
CD44-226ENST00000527889 SVEP1Q4LDE5 3571 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 TRBV6-7A0A0A0MS04 114 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 TRBV7-9A0A0J9YWB2 115 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 TMEM89A2RUT3 159 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 PSMB11A5LHX3 300 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 GAGE12JA6NER3 117 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 C15orf65H3BRN8 121 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 TIMM23O14925 209 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 SIGLEC5O15389 551 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 OR2J3O76001 311 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 SFT2D2O95562 160 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 IGHV3-7P01780 117 aa3.39□□□□□ -1.87
CD44-226ENST00000527889 MUC1P15941 1255 aaPredicted RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms