RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 PRR20BP86481 221 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 PRR20AP86496 221 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 TEX38Q6PEX7 206 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 REC114Q7Z4M0 266 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 DEFB108BQ8NET1 73 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 ZCCHC14Q8WYQ9 949 aaKnown RBP9.08□□□□□ -0.96
HDAC9-228ENST00000524023 HINT2Q9BX68 163 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 IL19Q9UHD0 177 aa9.08□□□□□ -0.96
HDAC9-228ENST00000524023 FNDC10F2Z333 226 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 MKRN2OSH3BPM6 223 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 MT-CO2P00403 227 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 IGHV1-46P01743 117 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 HNF1AP20823 631 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 GNG10P50151 68 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 RPL31P62899 125 aaKnown RBP9.07□□□□□ -0.96
HDAC9-228ENST00000524023 TNFAIP6P98066 277 aaPredicted RBP9.07□□□□□ -0.96
HDAC9-228ENST00000524023 GBGT1Q8N5D6 347 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 OR10G8Q8NGN5 311 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 CCL13Q99616 98 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 LINC00574Q9H8X3 128 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 PRNDQ9UKY0 176 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 SMG1Q96Q15 3661 aaKnown RBP9.07□□□□□ -0.96
HDAC9-228ENST00000524023 DYSFO75923 2080 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 MMP23AO75900 390 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 LINC00869P0C866 280 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 CCKARP32238 428 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 SELENOVP59797 346 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 C1orf185Q5T7R7 199 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 ZNF788Q6ZQV5 615 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 RP1L1Q8IWN7 2480 aaPredicted RBP9.07□□□□□ -0.96
HDAC9-228ENST00000524023 ZNF664Q8N3J9 261 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 FAM216BQ8N7L0 139 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 OR4P4Q8NGL7 312 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 CORO2AQ92828 525 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 C11orf52Q96A22 123 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 SFXN3Q9BWM7 321 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 TTC28Q96AY4 2481 aa9.07□□□□□ -0.96
HDAC9-228ENST00000524023 ZNF705GA8MUZ8 300 aaPredicted RBP9.06□□□□□ -0.96
HDAC9-228ENST00000524023 J3QR06 171 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 K7EN84 100 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 UPK2O00526 184 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 CT45A6P0DMU7 189 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 CT45A5P0DMU8 189 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 CT45A7P0DMV0 189 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 YPEL3P61236 119 aaPredicted RBP9.06□□□□□ -0.96
HDAC9-228ENST00000524023 PRCDQ00LT1 54 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 IGF2-ASQ6U949 168 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 IGFL3Q6UXB1 125 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 SLC25A48Q6ZT89 311 aaKnown RBP9.06□□□□□ -0.96
HDAC9-228ENST00000524023 C22orf34Q6ZV56 151 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 UHRF2Q96PU4 802 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 ZNF257Q9Y2Q1 563 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 SRRM4A7MD48 611 aaKnown RBP9.06□□□□□ -0.96
HDAC9-228ENST00000524023 C9JCJ5 164 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 TM4SF5O14894 197 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 IGKV1-16P04430 117 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 AREGP15514 252 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 HLA-DRB5Q30154 266 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 MIR17HGQ75NE6 70 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 MRPL41Q8IXM3 137 aaKnown RBP9.06□□□□□ -0.96
HDAC9-228ENST00000524023 PLEKHA3Q9HB20 300 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 RPUSD1Q9UJJ7 312 aaKnown RBP9.06□□□□□ -0.96
HDAC9-228ENST00000524023 SLC45A2Q9UMX9 530 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 TP53TG5Q9Y2B4 290 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 LY96Q9Y6Y9 160 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 MGAQ8IWI9 3026 aa9.06□□□□□ -0.96
HDAC9-228ENST00000524023 A8MWP6 167 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 ACTL6BO94805 426 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 ADMP35318 185 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 TMEM30BQ3MIR4 351 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 FAM122AQ96E09 287 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 NOL4LQ96MY1 436 aaPredicted RBP9.05□□□□□ -0.96
HDAC9-228ENST00000524023 LRFN3Q9BTN0 628 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 SLC35D1Q9NTN3 355 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 SLC25A10Q9UBX3 287 aaPredicted RBP9.05□□□□□ -0.96
HDAC9-228ENST00000524023 IGKV1OR2-108A0A075B7D4 117 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 TEX50A0A1B0GTY4 177 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 A0A1B0GUS0 222 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 TNFSF4P23510 183 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 ZNF90Q03938 601 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 FAM27E3Q08E93 113 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 RTL8BQ17RB0 113 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 Q6ZS92 163 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 MOB3BQ86TA1 216 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 TMEM256Q8N2U0 113 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 SNRNP40Q96DI7 357 aaKnown RBP9.05□□□□□ -0.96
HDAC9-228ENST00000524023 WFIKKN1Q96NZ8 548 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 NABP2Q9BQ15 211 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 DCAF16Q9NXF7 216 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 IL36BQ9NZH7 164 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 ZNRD1Q9P1U0 126 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 ARL2-SNX15V9GYD0 113 aa9.05□□□□□ -0.96
HDAC9-228ENST00000524023 TRAV9-1A0A075B6T8 112 aa9.04□□□□□ -0.96
HDAC9-228ENST00000524023 SLC17A3O00476 420 aa9.04□□□□□ -0.96
HDAC9-228ENST00000524023 CD40P25942 277 aa9.04□□□□□ -0.96
HDAC9-228ENST00000524023 C2orf83Q53S99 150 aa9.04□□□□□ -0.96
HDAC9-228ENST00000524023 TEX36Q5VZQ5 186 aa9.04□□□□□ -0.96
HDAC9-228ENST00000524023 EAF1Q96JC9 268 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-228ENST00000524023 hADV38S2A0JD32 116 aa9.03□□□□□ -0.96
HDAC9-228ENST00000524023 NUPR1O60356 82 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms