RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 C6orf62Q9GZU0 229 aaPredicted RBP12.47□□□□□ -0.41
LSM1-205ENST00000523511 COPZ2Q9P299 210 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 KLK9Q9UKQ9 250 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 TRAV3A0A0B4J244 114 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 CTDSPLO15194 276 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 RBMXL2O75526 392 aaKnown RBP12.46□□□□□ -0.41
LSM1-205ENST00000523511 NDUFB8O95169 186 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 REG1AP05451 166 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 OR13C7P0DN81 318 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 ARL3P36405 182 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 MECP2P51608 486 aaKnown RBP12.46□□□□□ -0.41
LSM1-205ENST00000523511 RND3P61587 244 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 SCGB2B2Q4G0G5 96 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 LCN12Q6JVE5 192 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 SLC25A24Q6NUK1 477 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 OR2K2Q8NGT1 345 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 FANCD2OSQ96PS1 177 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 MIXL1Q9H2W2 232 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 NDUFA4L2Q9NRX3 87 aa12.46□□□□□ -0.41
LSM1-205ENST00000523511 IGLV11-55A0A075B6I3 123 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 CCDC160A6NGH7 325 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 BMPR1BO00238 502 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 TRBV12-3P01733 135 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 CD74P04233 296 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 PIGPP57054 158 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 CLEC19AQ6UXS0 136 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 LHFPL1Q86WI0 220 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 GPHB5Q86YW7 130 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 SGPP2Q8IWX5 399 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 Q8N402 240 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 GDPD1Q8N9F7 314 aa12.45□□□□□ -0.42
LSM1-205ENST00000523511 C14orf166Q9Y224 244 aaKnown RBP12.45□□□□□ -0.42
LSM1-205ENST00000523511 IGLC7A0M8Q6 106 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 FABP12A6NFH5 140 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 LGALS9O00182 355 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 CLEC3BP05452 202 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 AKAIN1P0CW23 69 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 MYOD1P15172 320 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 GTSCR1Q86UQ5 136 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 MCFD2Q8NI22 146 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 VN1R17PQ8TDU5 208 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 DYNLRB2Q8TF09 96 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 SMIM4Q8WVI0 70 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 ISOC1Q96CN7 298 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 SCGB3A2Q96PL1 93 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 PALMDQ9NP74 551 aa12.44□□□□□ -0.42
LSM1-205ENST00000523511 TGP01266 2768 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 C3orf85A0A1B0GTC6 90 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 A0A1B0GW64 132 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 ZNF320A2RRD8 509 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 CGB1A6NKQ9 187 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 H3BMQ9 156 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 OR2C1O95371 312 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 CSN3P07498 182 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 ERHP84090 104 aaKnown RBP12.43□□□□□ -0.42
LSM1-205ENST00000523511 SURF2Q15527 256 aaPredicted RBP12.43□□□□□ -0.42
LSM1-205ENST00000523511 TRIM16LQ309B1 348 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 PLET1Q6UQ28 207 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 RRNAD1Q96FB5 475 aaKnown RBP12.43□□□□□ -0.42
LSM1-205ENST00000523511 ATP6V0BQ99437 205 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 PRRT1Q99946 306 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 PDCD10Q9BUL8 212 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 TMEM14BQ9NUH8 114 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 GAR1Q9NY12 217 aaKnown RBP12.43□□□□□ -0.42
LSM1-205ENST00000523511 TECRQ9NZ01 308 aaKnown RBP12.43□□□□□ -0.42
LSM1-205ENST00000523511 NSG2Q9Y328 171 aa12.43□□□□□ -0.42
LSM1-205ENST00000523511 C15orf61A6NNL5 157 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 PPP5D1E7EU14 171 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 CTSDP07339 412 aaPredicted RBP12.42□□□□□ -0.42
LSM1-205ENST00000523511 S100A5P33763 92 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 IL34Q6ZMJ4 242 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 OR10W1Q8NGF6 305 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 SEC22AQ96IW7 307 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 SCP2D1Q9UJQ7 156 aa12.42□□□□□ -0.42
LSM1-205ENST00000523511 F11RQ9Y624 299 aaKnown RBP12.42□□□□□ -0.42
LSM1-205ENST00000523511 PRKDCP78527 4128 aaKnown RBP12.42□□□□□ -0.42
LSM1-205ENST00000523511 TEX13DA0A0J9YY54 714 aaPredicted RBP12.41□□□□□ -0.42
LSM1-205ENST00000523511 GSTZ1O43708 216 aaPredicted RBP12.41□□□□□ -0.42
LSM1-205ENST00000523511 IGHV3-23P01764 117 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 PI3P19957 117 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 AKR1C2P52895 323 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 PPP5CP53041 499 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 HSPE1P61604 102 aaKnown RBP12.41□□□□□ -0.42
LSM1-205ENST00000523511 WT1-ASQ06250 92 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 RNASE11Q8TAA1 199 aaKnown RBP12.41□□□□□ -0.42
LSM1-205ENST00000523511 MRGPRFQ96AM1 343 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 SLIRPQ9GZT3 109 aaKnown RBP12.41□□□□□ -0.42
LSM1-205ENST00000523511 ZMAT4Q9H898 229 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 KCNIP3Q9Y2W7 256 aa12.41□□□□□ -0.42
LSM1-205ENST00000523511 FAUP35544 74 aaKnown RBP12.4□□□□□ -0.42
LSM1-205ENST00000523511 AP3S2P59780 193 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 DHODHQ02127 395 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 SPSB3Q6PJ21 355 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 C19orf35Q6ZS72 473 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 OR4D10Q8NGI6 311 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 OR13C8Q8NGS7 320 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 OR1P1Q8NH06 330 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 MARCH1Q8TCQ1 289 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 MARC2Q969Z3 335 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 PLEKHA3Q9HB20 300 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms