RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TRAV40A0A0B4J280 105 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 NDUFA3O95167 84 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 IFNA4P05014 189 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 RPL27AP46776 148 aaKnown RBP12.81□□□□□ -0.36
NUP54-214ENST00000514307 TMEM267Q0VDI3 215 aaPredicted RBP12.81□□□□□ -0.36
NUP54-214ENST00000514307 EXOSC2Q13868 293 aaKnown RBP12.81□□□□□ -0.36
NUP54-214ENST00000514307 TNXAQ16473 311 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 AANATQ16613 207 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 ETV3LQ6ZN32 361 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 KRTAP1-3Q8IUG1 177 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 LILRB2Q8N423 598 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 FBXL15Q9H469 300 aa12.81□□□□□ -0.36
NUP54-214ENST00000514307 SPG11Q96JI7 2443 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 CELSR2Q9HCU4 2923 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 NOTCH2Q04721 2471 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 IGHV3OR16-10A0A075B7F0 116 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 CFDP00746 253 aaPredicted RBP12.8□□□□□ -0.36
NUP54-214ENST00000514307 OPN1MWP04001 364 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 OPN1MW2P0DN77 364 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 OPN1MW3P0DN78 364 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 NPY1RP25929 384 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 CNTFRP26992 372 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 SLC38A11Q08AI6 406 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 CLINT1Q14677 625 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 C5orf64Q2M2E5 130 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 OR8G2PQ6IF36 304 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 Q8N6K4 173 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 MAPK1IP1LQ8NDC0 245 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 SLC24A4Q8NFF2 622 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 C17orf50Q8WW18 174 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 BSCL2Q96G97 398 aaPredicted RBP12.8□□□□□ -0.36
NUP54-214ENST00000514307 OR4C12Q96R67 309 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 RASL11BQ9BPW5 248 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 ARV1Q9H2C2 271 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 SLC25A32Q9H2D1 315 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 WFDC1Q9HC57 220 aa12.8□□□□□ -0.36
NUP54-214ENST00000514307 ABCA12Q86UK0 2595 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 SEC11BP0C7V7 166 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 IGHV4-38-2P0DP08 117 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 CD24P25063 80 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 GNB1P62873 340 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 PJVKQ0ZLH3 352 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 C2orf83Q53S99 150 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 RUSC1-AS1Q66K80 236 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 ZNF562Q6V9R5 426 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 BRD3OSQ6XYD6 125 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 GINS3Q9BRX5 216 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 PARD6GQ9BYG4 376 aaPredicted RBP12.79□□□□□ -0.36
NUP54-214ENST00000514307 PITPNC1Q9UKF7 332 aa12.79□□□□□ -0.36
NUP54-214ENST00000514307 ITPR2Q14571 2701 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 A0A0U1RQK1 487 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 C15orf62A8K5M9 175 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 CA2P00918 260 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 OR13C7P0DN81 318 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 FAM120AOSQ5T036 256 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 ALKAL2Q6UX46 152 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 WFDC11Q8NEX6 87 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 RNF141Q8WVD5 230 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 RBMXL1Q96E39 390 aaKnown RBP12.78□□□□□ -0.36
NUP54-214ENST00000514307 TMEM147Q9BVK8 224 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 UQCC1Q9NVA1 299 aa12.78□□□□□ -0.36
NUP54-214ENST00000514307 FCN1O00602 326 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 AVPP01185 164 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 MYOD1P15172 320 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 DLK1P80370 383 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 FXYD3Q14802 87 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 MRGPRG-AS1Q2M3A8 158 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 LRRC75BQ2VPJ9 315 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 KLF17Q5JT82 389 aaPredicted RBP12.77□□□□□ -0.37
NUP54-214ENST00000514307 OR1L6Q8NGR2 347 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 SSX3Q99909 188 aa12.77□□□□□ -0.37
NUP54-214ENST00000514307 FBN2P35556 2912 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 PMS2P5A8MQ11 134 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 FNDC10F2Z333 226 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 CYB5BO43169 146 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 PAX6P26367 422 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 GPX4P36969 197 aaPredicted RBP12.76□□□□□ -0.37
NUP54-214ENST00000514307 RAB5CP51148 216 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 ARL16Q0P5N6 197 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 CLLU1Q5K131 121 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 ZNF709Q8N972 641 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 OR10W1Q8NGF6 305 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 RNASEH2CQ8TDP1 164 aaKnown RBP12.76□□□□□ -0.37
NUP54-214ENST00000514307 CACNG8Q8WXS5 425 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 NPVFQ9HCQ7 196 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 TPSG1Q9NRR2 321 aa12.76□□□□□ -0.37
NUP54-214ENST00000514307 TEX15Q9BXT5 2789 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 ARHGAP32A7KAX9 2087 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 UMAD1C9J7I0 102 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 M0QZK8 103 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 MPDU1O75352 247 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 FBXO24O75426 580 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 RAB31Q13636 194 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 BSXQ3C1V8 233 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 ETFRF1Q6IPR1 90 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 HAPLN4Q86UW8 402 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 HSD17B11Q8NBQ5 300 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 TMED6Q8WW62 240 aa12.75□□□□□ -0.37
NUP54-214ENST00000514307 SRSF12Q8WXF0 261 aaKnown RBP12.75□□□□□ -0.37
NUP54-214ENST00000514307 RBM14Q96PK6 669 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms