RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 KIR3DL3Q8N743 410 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 FER1L6-AS1Q8NA97 138 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 SCGB3A1Q96QR1 104 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 KCNK17Q96T54 332 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 PHLDA3Q9Y5J5 127 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 INSIG2Q9Y5U4 225 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 PF4P02776 101 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 ARTNQ5T4W7 220 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 ZNF764Q96H86 408 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 RPP25Q9BUL9 199 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 OR2H1Q9GZK4 316 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 IGKV3-7A0A075B6H7 116 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 PATE3B3GLJ2 98 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 EGR1P18146 543 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 PSG3Q16557 428 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 MIC13Q5XKP0 118 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 C1orf122Q6ZSJ8 110 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 GPHA2Q96T91 129 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 WFDC6Q9BQY6 131 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 TMEM222Q9H0R3 208 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 RPRMQ9NS64 109 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 ODAMA1E959 279 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 UBE2L6O14933 153 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 MLNRO43193 412 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 CA11O75493 328 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 OR9G9P0C7N8 305 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 DRD3P35462 400 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 RPL31P62899 125 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 GFI1BQ5VTD9 330 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 C10orf35Q96D05 121 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 GPR82Q96P67 336 aa7.47□□□□□ -1.21
LIMCH1-218ENST00000513024 IGHV3-21A0A0B4J1V1 117 aa7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 RAC3P60763 192 aa7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 BCL6BQ8N143 479 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 NXT2Q9NPJ8 142 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 PIKFYVEQ9Y2I7 2098 aa7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 A0A0G2JMZ2 1700 aa7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 LRRC37A2A6NM11 1700 aa7.46□□□□□ -1.21
LIMCH1-218ENST00000513024 A8MWP6 167 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 AHRRA9YTQ3 701 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 PLNP26678 52 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 TNFAIP6P98066 277 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 CD200R1LQ6Q8B3 271 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 C2orf82Q6UX34 121 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 COX14Q96I36 57 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNF488Q96MN9 340 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 UCN2Q96RP3 112 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 AMELYQ99218 206 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 VKORC1Q9BQB6 163 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 ESPL1Q14674 2120 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 RASL11AQ6T310 242 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 TM4SF19Q96DZ7 209 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 RCC1LQ96I51 464 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 PILRBQ9UKJ0 227 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 TRBV24-1A0A075B6N3 115 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A1B0GUT8 65 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 FAM90A26D6RGX4 464 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 SYNGR1O43759 233 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 NDUFA3O95167 84 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 CISD3P0C7P0 127 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 GZMHP20718 246 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 ADMP35318 185 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 CD300EQ496F6 205 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 GOLT1AQ6ZVE7 132 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 FBLIM1Q8WUP2 373 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 GPR146Q96CH1 333 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 C19orf24Q9BVV8 132 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 DTX4Q9Y2E6 619 aa7.46□□□□□ -1.22
LIMCH1-218ENST00000513024 TMPRSS2O15393 492 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 DPM2O94777 84 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 CDKN1BP46527 198 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 ZNF56Q15929 161 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 TBR1Q16650 682 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 CCDC144NLQ6NUI1 221 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 SHISA5Q8N114 240 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 RABAC1Q9UI14 185 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 TSC2P49815 1807 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 DSPPQ9NZW4 1301 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 TRBV20-1A0A075B6N2 111 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 RPL36A-HNRNPH2H7BZ11 118 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 BGLAPP02818 100 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 UCP1P25874 307 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 LGALS7P47929 136 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 LHX2P50458 406 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 LRTM2Q8N967 370 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 TMEM52Q8NDY8 209 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 PDCD11Q14690 1871 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 RALGAPA2Q2PPJ7 1873 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A1W2PPE3 182 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 PIN1P1O15428 100 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 AZU1P20160 251 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 RASL10BQ96S79 203 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 CXXC4Q9H2H0 198 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 SF3B6Q9Y3B4 125 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 TRPM6Q9BX84 2022 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 GAGE12HA6NDE8 117 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 SMAD7O15105 426 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 KIR3DS1Q14943 382 aa7.45□□□□□ -1.22
LIMCH1-218ENST00000513024 ORMDL3Q8N138 153 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms