RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ZNHIT1O43257 154 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 PSG3Q16557 428 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 FGF11Q92914 225 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 CD300EQ496F6 205 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 ACTL10Q5JWF8 245 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 MRPL20Q9BYC9 149 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 H3BMM0 161 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 WISP3O95389 354 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 TDGF1P13385 188 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 MPV17L2Q567V2 206 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 LIMS2Q7Z4I7 341 aa9.52□□□□□ -0.89
LIMCH1-217ENST00000512946 LOC105371242A0A075B767 164 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 PPIAL4CA0A0B4J2A2 164 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 PPIAL4GP0DN37 164 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 SLC25A53Q5H9E4 307 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 Q9H3A6 140 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 TIMP3P35625 211 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 LAGE3Q14657 143 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 PRSS41Q7RTY9 318 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 SPAG17Q6Q759 2223 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 REG1BP48304 166 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 GAGE5Q13069 117 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 GAGE6Q13070 117 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 PLA2G3Q9NZ20 509 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 TOMM7Q9P0U1 55 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 BRWD1Q9NSI6 2320 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 IGKV3D-15A0A087WSY6 115 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 IGKV3-15P01624 115 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 GUSBP1Q15486 140 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 KLHDC3Q9BQ90 382 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 RNF126Q9BV68 326 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 HCSTQ9UBK5 93 aa9.51□□□□□ -0.89
LIMCH1-217ENST00000512946 TRBV6-7A0A0A0MS04 114 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 GUSBP11Q6P575 273 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 PPP1R27Q86WC6 154 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 FAM90A1Q86YD7 464 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 GGTLC1Q9BX51 225 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 CLEC7AQ9BXN2 247 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 ZNF688P0C7X2 276 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 FAM90A2PQ658T7 463 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 TPRX1Q8N7U7 411 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 UPK2O00526 184 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 FCN3O75636 299 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 DUSP14O95147 198 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 MALP21145 153 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 RASL10AQ92737 203 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 TBX6O95947 436 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 DUX5Q96PT3 197 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 FAM117AQ9C073 453 aa9.5□□□□□ -0.89
LIMCH1-217ENST00000512946 RGPD8O14715 1765 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 SYS1-DBNDD2H3BUS1 97 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 SOCS3O14543 225 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 GFRA3O60609 400 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 COL9A1P20849 921 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 PGFP49763 221 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 ID3Q02535 119 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 ASPHD2Q6ICH7 369 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 ZNF664Q8N3J9 261 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 ZPLD1Q8TCW7 415 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 UBE2WQ96B02 151 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 RTBDNQ9BSG5 229 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 R4GN57 208 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 LAMB4A4D0S4 1761 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 IGKV3D-11A0A0A0MRZ8 115 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 CGB1A6NKQ9 187 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 SMAD7O15105 426 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 NDUFS6O75380 124 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 IGKV3-11P04433 115 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 C18orf12Q96KH6 178 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 CCL13Q99616 98 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 LHX9Q9NQ69 397 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 CICQ96RK0 1608 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 CDK2AP2O75956 126 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 IGFBP2P18065 325 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 Q0VG73 95 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 RTN4RL2Q86UN3 420 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 DTX1Q86Y01 620 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 OCC1Q8TAD7 63 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 GP6Q9HCN6 339 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 PILRBQ9UKJ0 227 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 WDR83OSQ9Y284 106 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1W2PPE3 182 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1W2PRD5 423 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1W2PRF3 423 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1W2PRM7 423 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 NRN1LQ496H8 165 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 LINC01590Q5TEZ4 76 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 ZNF385AQ96PM9 386 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 ARFGEF2Q9Y6D5 1785 aa9.49□□□□□ -0.89
LIMCH1-217ENST00000512946 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 C9orf118A6NHY6 69 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 SHISA7A6NL88 538 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 C3orf79P0CE67 100 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1W2PQF6 199 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 ZAR1Q86SH2 424 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 JPT2Q9H910 190 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 SEPSECSQ9HD40 501 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 LHFPL6Q9Y693 200 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A0G2JK05 382 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1B0GWJ7 208 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms