RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	GABARAP	H6UMI1	98 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	SNAPC5	O75971	98 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	RAB3D	O95716	219 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	S100G	P29377	79 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	MFAP2	P55001	183 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	IL18	Q14116	193 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	TATDN3	Q17R31	274 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	SBSPON	Q8IVN8	264 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	TMEM229B	Q8NBD8	167 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	CACNG8	Q8WXS5	425 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	EEF1AKMT3	Q96AZ1	226 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	DIRAS2	Q96HU8	199 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	SEC22A	Q96IW7	307 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	TP53RK	Q96S44	253 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	NDUFA4L2	Q9NRX3	87 aa		10.09	□□□□□ -0.79
RNF4-215	ENST00000511843	IGHV3-35	A0A0C4DH35	117 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	NOL3	O60936	208 aa	Known RBP	10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	GGCT	O75223	188 aa	Known RBP	10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	CD74	P04233	296 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	SERPINE2	P07093	398 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	FRMD6-AS1	P0C7T7	363 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	HIST1H1B	P16401	226 aa	Known RBP	10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	GPR183	P32249	361 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	MECP2	P51608	486 aa	Known RBP	10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	PIGP	P57054	158 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	TAS2R19	P59542	299 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	KLK9	Q2XQG4	91 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	SLC25A24	Q6NUK1	477 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	STEAP1B	Q6NZ63	245 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843		Q8N1Y9	231 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	ARRDC1	Q8N5I2	433 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	GDPD1	Q8N9F7	314 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	OR13C8	Q8NGS7	320 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	MARCH1	Q8TCQ1	289 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	SMIM4	Q8WVI0	70 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	SLIRP	Q9GZT3	109 aa	Known RBP	10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	PEMT	Q9UBM1	199 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	KLK9	Q9UKQ9	250 aa		10.08	□□□□□ -0.8
RNF4-215	ENST00000511843	ZNF320	A2RRD8	509 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	C2orf70	A6NJV1	201 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	C15orf61	A6NNL5	157 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	TPPP	O94811	219 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	CLEC3B	P05452	202 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	FGF2	P09038	288 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	TBP	P20226	339 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	RND3	P61587	244 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	SP6	Q3SY56	376 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	SPINK9	Q5DT21	86 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	H2BFWT	Q7Z2G1	175 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	TERB2	Q8NHR7	220 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	ZNF502	Q8TBZ5	544 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	C15orf40	Q8WUR7	153 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	LSM10	Q969L4	123 aa	Known RBP	10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	BCL7B	Q9BQE9	202 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	TMEM14B	Q9NUH8	114 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	PRND	Q9UKY0	176 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	CEPT1	Q9Y6K0	416 aa		10.07	□□□□□ -0.8
RNF4-215	ENST00000511843	IGKV1-5	P01602	117 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	IGHV4-30-4	P0DP06	118 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	FOLR2	P14207	255 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	PTBP1	P26599	531 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	CD300E	Q496F6	205 aa	Predicted RBP	10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	THOC7	Q6I9Y2	204 aa	Known RBP	10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	UNQ9165/PRO28630	Q6UXU0	137 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	OR4C16	Q8NGL9	310 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	MCFD2	Q8NI22	146 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	DYNLRB2	Q8TF09	96 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	CXorf58	Q96LI9	332 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	SRSF8	Q9BRL6	282 aa	Known RBP	10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	SIGLEC8	Q9NYZ4	499 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	F11R	Q9Y624	299 aa	Known RBP	10.06	□□□□□ -0.8
RNF4-215	ENST00000511843		U3KQK5	164 aa		10.06	□□□□□ -0.8
RNF4-215	ENST00000511843	TRBV7-1	A0A0A6YYK4	115 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	C3orf85	A0A1B0GTC6	90 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	CCDC160	A6NGH7	325 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	OR2T8	A6NH00	312 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843		H0Y980	276 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	NHLRC4	P0CG21	123 aa	Predicted RBP	10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	TNFSF8	P32971	234 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	MRPS10	P82664	201 aa	Known RBP	10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	FAM209B	Q5JX69	171 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	LCN12	Q6JVE5	192 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843		Q8N402	240 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	OR5B3	Q8NH48	314 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	OR4A16	Q8NH70	328 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	ZNF486	Q96H40	463 aa	Predicted RBP	10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	TSC22D3	Q99576	134 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	THAP7	Q9BT49	309 aa	Predicted RBP	10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	COPZ2	Q9P299	210 aa		10.05	□□□□□ -0.8
RNF4-215	ENST00000511843	IGHV3OR16-8	A0A075B7F1	116 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	TMEM213	A2RRL7	107 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	CTDSPL	O15194	276 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	IGHV3-48	P01763	117 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	SSBP1	Q04837	148 aa	Known RBP	10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	TRIM16L	Q309B1	348 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	DEFB114	Q30KQ6	69 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	TM4SF20	Q53R12	229 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	PLET1	Q6UQ28	207 aa		10.04	□□□□□ -0.8
RNF4-215	ENST00000511843	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms