RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 OR10C1Q96KK4 312 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 C9orf85Q96MD7 179 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ZFP3Q96NJ6 502 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PEBP4Q96S96 227 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 NRTNQ99748 197 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 MICU1Q9BPX6 476 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ANAPC13Q9BS18 74 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PSMG3Q9BT73 122 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 EFCAB11Q9BUY7 163 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 PBDC1Q9BVG4 233 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TSSK6Q9BXA6 273 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 HCAR1Q9BXC0 346 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SLC25A51Q9H1U9 297 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR52D1Q9H346 318 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RERGLQ9H628 205 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SGK2Q9HBY8 427 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 APMAPQ9HDC9 416 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ESM1Q9NQ30 184 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 SLC17A5Q9NRA2 495 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 INPP5EQ9NRR6 644 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 RBM22Q9NW64 420 aaKnown RBP eCLIP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 MRPL16Q9NX20 251 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CNOT2Q9NZN8 540 aaKnown RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 KLRF1Q9NZS2 232 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 CCDC167Q9P0B6 97 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 OR1A1Q9P1Q5 309 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 UQCR10Q9UDW1 63 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 IKZF2Q9UKS7 526 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TRAPPC2LQ9UL33 140 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 FUT9Q9Y231 359 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 FOXA2Q9Y261 457 aaPredicted RBP1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ANK2Q01484 3957 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 TENM1Q9UKZ4 2725 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 ABCA4P78363 2273 aa1.55□□□□□ -2.16
HMGB1-208ENST00000490788 HERC2O95714 4834 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MYH11P35749 1972 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CHD3Q12873 2000 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TRAV14DV4A0A0A6YYC5 116 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 A0A0A6YYD4 124 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 A0A0B4J2A0 478 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 A0A0G2JLM5 398 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 A0A0J9YY10 115 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 LOC285095A0A1B0GVY8 99 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 A0A1B0GX78 115 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 A0A1W2PRE2 83 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 IGLC7A0M8Q6 106 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM213A2RRL7 107 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF860A6NHJ4 632 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SLC22A20A6NK97 555 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR4C45A6NMZ5 311 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 IFITM5A6NNB3 132 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF850A8MQ14 1090 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 BBIP1A8MTZ0 92 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FABP5P3A8MUU1 101 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 SNRPGP15A8MWD9 76 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 C9JVG2 144 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CCDC179H3BU77 68 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 APOC4-APOC2K7ER74 178 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FXYD1O00168 92 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CCL21O00585 134 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PLPP3O14495 311 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 DEGS1O15121 323 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PIN1P1O15428 100 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TRAF3IP2O43734 574 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TIMM8AO60220 97 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MPZL2O60487 215 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CREBL2O60519 120 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TPST2O60704 377 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 HYPMO75409 117 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 FOXH1O75593 365 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 OR2J3O76001 311 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 ETHE1O95571 254 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 C1QAP02745 245 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 GAPDHP04406 335 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TYMSP04818 313 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 IL5P05113 134 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 HPNP05981 417 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 EIF4EP06730 217 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CTSLP07711 333 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 IGLC1P0CG04 106 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TPT1P13693 172 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 RPL7P18124 248 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PGCP20142 388 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PSMB1P20618 241 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 MDKP21741 143 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 USF1P22415 310 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NPY1RP25929 384 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 HTR1FP30939 366 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PYCR1P32322 319 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 HRH1P35367 487 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CHI3L1P36222 383 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 KIR2DS4P43632 304 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 NPBWR2P48146 333 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 PRLHRP49683 370 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 DAPP51397 102 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 CNN1P51911 297 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 H2BFSP57053 126 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 TAS2R31P59538 309 aa1.54□□□□□ -2.16
HMGB1-208ENST00000490788 UBE2MP61081 183 aaKnown RBP1.54□□□□□ -2.16
HMGB1-208ENST00000490788 RPS25P62851 125 aaKnown RBP1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms