RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 TMEM86AQ8N2M4 240 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 EXOC3-AS1Q8N2X6 119 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 C12orf45Q8N5I9 185 aaPredicted RBP2.58□□□□□ -2
HMGB1P38-201ENST00000490557 SGMS2Q8NHU3 365 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 MAL2Q969L2 176 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 SHANK2-AS3Q9BTD1 123 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 TSSK6Q9BXA6 273 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 ZNF286AQ9HBT8 521 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 ZNF230Q9UIE0 474 aaPredicted RBP2.58□□□□□ -2
HMGB1P38-201ENST00000490557 HSPB8Q9UJY1 196 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 PTPRJQ12913 1337 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 BRWD3Q6RI45 1802 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 ABCC12Q96J65 1359 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 ARAP3Q8WWN8 1544 aa2.58□□□□□ -2
HMGB1P38-201ENST00000490557 TRAV36DV7A0A075B6V5 113 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 IGHV3OR15-7A0A075B7D8 119 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 A0A087WX48 190 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 A0A1B0GV90 55 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 A0A1B0GX51 115 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 DUXBA0A1W2PPF3 345 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 IZUMO1RA6ND01 250 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 K7EP13 123 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 RNASE2P10153 161 aaKnown RBP2.57□□□□□ -2
HMGB1P38-201ENST00000490557 CD28P10747 220 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 BLVRBP30043 206 aaPredicted RBP2.57□□□□□ -2
HMGB1P38-201ENST00000490557 CA5AP35218 305 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 TAS2R45P59539 299 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 FGF12P61328 243 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 ZNF678Q5SXM1 525 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 ZNF283Q8N7M2 679 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 NUP35Q8NFH5 326 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 OR5A1Q8NGJ0 315 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 OR4K13Q8NH42 304 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 CIRBP-AS1Q8TBR5 109 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 LMX1AQ8TE12 382 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 C1orf54Q8WWF1 131 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 ITLN2Q8WWU7 325 aaPredicted RBP2.57□□□□□ -2
HMGB1P38-201ENST00000490557 TOMM6Q96B49 74 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 PEBP4Q96S96 227 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 C1QTNF6Q9BXI9 259 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 NKX6-2Q9C056 277 aaPredicted RBP2.57□□□□□ -2
HMGB1P38-201ENST00000490557 IMUPQ9GZP8 106 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 RPUSD1Q9UJJ7 312 aaKnown RBP2.57□□□□□ -2
HMGB1P38-201ENST00000490557 LAMTOR2Q9Y2Q5 125 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 DOCK8Q8NF50 2099 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 SSH2Q76I76 1423 aa2.57□□□□□ -2
HMGB1P38-201ENST00000490557 IGHV3-21A0A0B4J1V1 117 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 IGHV3-43A0A0B4J1X8 118 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 IGHV1-3A0A0C4DH29 117 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 IGKV1-12A0A0C4DH73 117 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 TMEM269A0A1B0GVZ9 245 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 LEUTXA8MZ59 168 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 F8W036 122 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 CYB5BO43169 146 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 TPST1O60507 370 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 NRASP01111 189 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 HRASP01112 189 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 KRASP01116 189 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 IGKV1D-12P01611 117 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 IGKV4-1P06312 121 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 SRP19P09132 144 aaKnown RBP2.56□□□□□ -2
HMGB1P38-201ENST00000490557 UBBP0CG47 229 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 INAFM2P0DMQ5 153 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 RPL7P18124 248 aaKnown RBP2.56□□□□□ -2
HMGB1P38-201ENST00000490557 CMPK1P30085 196 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 RAB13P51153 203 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 AKR1C2P52895 323 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 ELF3P78545 371 aaPredicted RBP2.56□□□□□ -2
HMGB1P38-201ENST00000490557 GPHB5Q86YW7 130 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 AMN1Q8IY45 258 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 CANT1Q8WVQ1 401 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 ISOC1Q96CN7 298 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 ADAT3Q96EY9 351 aaPredicted RBP2.56□□□□□ -2
HMGB1P38-201ENST00000490557 C2orf50Q96LR7 162 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 C2orf88Q9BSF0 95 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 PLA2G12AQ9BZM1 189 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 OR2J1Q9GZK6 312 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 AMMECR1Q9Y4X0 333 aaPredicted RBP2.56□□□□□ -2
HMGB1P38-201ENST00000490557 THSD7AQ9UPZ6 1657 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 BAZ2AQ9UIF9 1905 aaKnown RBP2.56□□□□□ -2
HMGB1P38-201ENST00000490557 DOCK3Q8IZD9 2030 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 GPR179Q6PRD1 2367 aa2.56□□□□□ -2
HMGB1P38-201ENST00000490557 A0A1B0GW54 56 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 C9JCJ5 164 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 UBE2L6O14933 153 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 PLA2G10O15496 165 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 DENND4BO75064 1496 aaPredicted RBP2.55□□□□□ -2
HMGB1P38-201ENST00000490557 IFNA10P01566 189 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 C1QCP02747 245 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 OR5AC1P0C628 307 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 MPC1LP0DKB6 136 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 PTHLHP12272 177 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 S100PP25815 95 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 TGFBR1P36897 503 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 GABRA2P47869 451 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 POLR2HP52434 150 aaKnown RBP2.55□□□□□ -2
HMGB1P38-201ENST00000490557 FKBP1AP62942 108 aaKnown RBP2.55□□□□□ -2
HMGB1P38-201ENST00000490557 ENDOGQ14249 297 aaKnown RBP2.55□□□□□ -2
HMGB1P38-201ENST00000490557 UHRF1BP1Q6BDS2 1440 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 CCDC171Q6TFL3 1326 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms