RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 SCN3BQ9NY72 215 aa10.21□□□□□ -0.77
VARS-227ENST00000489979 IFITM5A6NNB3 132 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 PDCD5O14737 125 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 ADMP35318 185 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 MLLT11Q13015 90 aaPredicted RBP10.2□□□□□ -0.78
VARS-227ENST00000489979 ARL6IP1Q15041 203 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 HACD4Q5VWC8 232 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 SLC25A24Q6NUK1 477 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 SPSB3Q6PJ21 355 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 SPAG16Q8N0X2 631 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 GDPD1Q8N9F7 314 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 NUDCD2Q8WVJ2 157 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 QTRT1Q9BXR0 403 aaKnown RBP10.2□□□□□ -0.78
VARS-227ENST00000489979 COMMD5Q9GZQ3 224 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 DCSTAMPQ9H295 470 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 VCXQ9H320 206 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 ACOT13Q9NPJ3 140 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 SMPXQ9UHP9 88 aa10.2□□□□□ -0.78
VARS-227ENST00000489979 IGKV3-7A0A075B6H7 116 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 C15orf62A8K5M9 175 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 C11orf94C9JXX5 98 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 F8W735 103 aaPredicted RBP10.19□□□□□ -0.78
VARS-227ENST00000489979 CYB5BO43169 146 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 CA1P00915 261 aaPredicted RBP10.19□□□□□ -0.78
VARS-227ENST00000489979 OR13C7P0DN81 318 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 CMC4P56277 68 aaPredicted RBP10.19□□□□□ -0.78
VARS-227ENST00000489979 TAS2R31P59538 309 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 RCN1Q15293 331 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 UBAC2Q8NBM4 344 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 SECTM1Q8WVN6 248 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 CCL28Q9NRJ3 127 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 C21orf62Q9NYP8 219 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 ETV7Q9Y603 341 aa10.19□□□□□ -0.78
VARS-227ENST00000489979 TRAV1-2A0A0B4J238 106 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 TMEM235A6NFC5 223 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 ANKRD65E5RJM6 399 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 SULT1C2O00338 296 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 CHEK1O14757 476 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 RBFOX2O43251 390 aaKnown RBP eCLIP10.18□□□□□ -0.78
VARS-227ENST00000489979 SERPINE2P07093 398 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 NQO2P16083 231 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 WT1-ASQ06250 92 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 TMEM187Q14656 261 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 POU2AF1Q16633 256 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 OGFRL1Q5TC84 451 aaPredicted RBP10.18□□□□□ -0.78
VARS-227ENST00000489979 TMEM116Q8NCL8 245 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 SCARB1Q8WTV0 552 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 MGLLQ99685 303 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 RHPN1-AS1Q9BWJ2 59 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 TMEM140Q9NV12 185 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 ANXA10Q9UJ72 324 aa10.18□□□□□ -0.78
VARS-227ENST00000489979 IGHV3-49A0A0A0MS15 119 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 IGHV7-4-1A0A0J9YVY3 117 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 MRPS14O60783 128 aaKnown RBP10.17□□□□□ -0.78
VARS-227ENST00000489979 HPRT1P00492 218 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 TRAPPC2P0DI81 140 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 TRAPPC2BP0DI82 140 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 GNG2P59768 71 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 Q56UQ5 140 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 THOC7Q6I9Y2 204 aaKnown RBP10.17□□□□□ -0.78
VARS-227ENST00000489979 ZNF773Q6PK81 442 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 GBGT1Q8N5D6 347 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 DMBX1Q8NFW5 382 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 ZNF414Q96IQ9 312 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 ATP6V0BQ99437 205 aa10.17□□□□□ -0.78
VARS-227ENST00000489979 TEX50A0A1B0GTY4 177 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 PRSS29PA6NIE9 313 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 K7EIM0 57 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 RGS10O43665 173 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 SSX5O60225 188 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 PTHLHP12272 177 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 RAB3BP20337 219 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 MYL9P24844 172 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 FCGR2CP31995 323 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 MSMO1Q15800 293 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 HSD17B13Q7Z5P4 300 aaPredicted RBP10.16□□□□□ -0.78
VARS-227ENST00000489979 Q8NAQ8 132 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 ZBTB34Q8NCN2 500 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 OR13F1Q8NGS4 319 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 CMTM3Q96MX0 182 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 CCDC90BQ9GZT6 254 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 HRH4Q9H3N8 390 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 DUSP21Q9H596 190 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 TPRKBQ9Y3C4 175 aa10.16□□□□□ -0.78
VARS-227ENST00000489979 F11RQ9Y624 299 aaKnown RBP10.16□□□□□ -0.78
VARS-227ENST00000489979 HSPG2P98160 4391 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 IGHV4-4A0A075B6R2 117 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 IGHV3OR16-13A0A075B7E8 117 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 IGHV3-74A0A0B4J1X5 117 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 YIF1AO95070 293 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 CTSGP08311 255 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 HLA-DMBP28068 263 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 CATR1Q13166 79 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 FAM90A2PQ658T7 463 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 NR2C2APQ86WQ0 139 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 OR1L8Q8NGR8 309 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 HINT2Q9BX68 163 aa10.15□□□□□ -0.78
VARS-227ENST00000489979 AGRNO00468 2067 aa10.14□□□□□ -0.79
VARS-227ENST00000489979 SMIM30A4D0T7 59 aa10.14□□□□□ -0.79
VARS-227ENST00000489979 C15orf61A6NNL5 157 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms