RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZNF345Q14585 488 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 ZNF846Q147U1 533 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 CDK5R1Q15078 307 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 CDKL4Q5MAI5 379 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 CD200R1LQ6Q8B3 271 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 C5orf46Q6UWT4 87 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 TBC1D19Q8N5T2 526 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 MBD3L1Q8WWY6 194 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 ROPN1LQ96C74 230 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 ADAT1Q9BUB4 502 aaKnown RBP0.38□□□□□ -2.35
VPS50-216ENST00000484954 HDHD2Q9H0R4 259 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 OR51I1Q9H343 314 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 FUT9Q9Y231 359 aa0.38□□□□□ -2.35
VPS50-216ENST00000484954 ZFHX2Q9C0A1 2572 aaPredicted RBP0.37□□□□□ -2.35
VPS50-216ENST00000484954 MEIKINA0A087WXM9 373 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 TGIF2-C20orf24A0A0A6YYL0 155 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 A0A0J9YY10 115 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 A0A1B0GX78 115 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 IRGMA1A4Y4 181 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 PRM2P04554 102 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 ISG15P05161 165 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 MSMBP08118 114 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 OCM2P0CE71 109 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 KCNE1P15382 129 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 CCR7P32248 378 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 ZNF80P51504 273 aaPredicted RBP0.37□□□□□ -2.35
VPS50-216ENST00000484954 TCL1AP56279 114 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 CCL20P78556 96 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 IBA57Q5T440 356 aaKnown RBP0.37□□□□□ -2.35
VPS50-216ENST00000484954 SYPL2Q5VXT5 272 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 Q6ZQT0 140 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 SLC51BQ86UW2 128 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 C10orf67Q8IYJ2 551 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 PTH2Q96A98 100 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 CNBD2Q96M20 576 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 CST9LQ9H4G1 147 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 EFCAB1Q9HAE3 211 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 FGFR1OP2Q9NVK5 253 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 MED9Q9NWA0 146 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 CMTM6Q9NX76 183 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 IL36BQ9NZH7 164 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 TP73-AS1Q9UF72 201 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 USP24Q9UPU5 2620 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 DCCP43146 1447 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 EVC2Q86UK5 1308 aa0.37□□□□□ -2.35
VPS50-216ENST00000484954 DICER1Q9UPY3 1922 aaKnown RBP0.36□□□□□ -2.35
VPS50-216ENST00000484954 WDR90Q96KV7 1748 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 FLT4P35916 1363 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 TRBV20OR9-2A0A075B6H5 130 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 IGKV3-7A0A075B6H7 116 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 GGT3PA6NGU5 568 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 FABP5P3A8MUU1 101 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 LRRN3E7EW58 273 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 SLC22A1O15245 554 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 ACOX3O15254 700 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 PMP2P02689 132 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 SHBGP04278 402 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 CTSDP07339 412 aaPredicted RBP0.36□□□□□ -2.35
VPS50-216ENST00000484954 OR5G3P0C626 314 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 UBBP0CG47 229 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 ELOBQ15370 118 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 SURF2Q15527 256 aaPredicted RBP0.36□□□□□ -2.35
VPS50-216ENST00000484954 BATFQ16520 125 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 C9orf64Q5T6V5 341 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 LCN15Q6UWW0 184 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 DCXRQ7Z4W1 244 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 C1orf158Q8N1D5 194 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 TMEM86AQ8N2M4 240 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 DDI1Q8WTU0 396 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 DERL1Q9BUN8 251 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 PARD6GQ9BYG4 376 aaPredicted RBP0.36□□□□□ -2.35
VPS50-216ENST00000484954 DRC3Q9H069 523 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 FKBP14Q9NWM8 211 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 USE1Q9NZ43 259 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 SETD5Q9C0A6 1442 aa0.36□□□□□ -2.35
VPS50-216ENST00000484954 SMARCA4P51532 1647 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 INTS1Q8N201 2190 aaKnown RBP0.35□□□□□ -2.35
VPS50-216ENST00000484954 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.35□□□□□ -2.35
VPS50-216ENST00000484954 TMEM212A6NML5 194 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 EEF1E1-BLOC1S5C9J1V9 151 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 HCRTO43612 131 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 NOS1APO75052 506 aaPredicted RBP0.35□□□□□ -2.35
VPS50-216ENST00000484954 IGKV1-5P01602 117 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 APOEP02649 317 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 TPM3P06753 285 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 IL9P15248 144 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 RPS4Y1P22090 263 aaKnown RBP0.35□□□□□ -2.35
VPS50-216ENST00000484954 TPM4P67936 248 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 RUNX1Q01196 453 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 CAV1Q03135 178 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 PLCXD2Q0VAA5 305 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 OR2F1Q13607 317 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 GLT8D1Q68CQ7 371 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.35□□□□□ -2.35
VPS50-216ENST00000484954 FAM19A2Q8N3H0 131 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 OR51D1Q8NGF3 324 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 PFN4Q8NHR9 129 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 RASSF5Q8WWW0 418 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 SLC35B4Q969S0 331 aa0.35□□□□□ -2.35
VPS50-216ENST00000484954 PPP1R2P1Q96PQ5 205 aa0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms