RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 TUBA4BQ9H853 241 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 PLEKHA3Q9HB20 300 aa11.25□□□□□ -0.61
LIMS3-204ENST00000482065 TRBV7-1A0A0A6YYK4 115 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 ZNF320A2RRD8 509 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 TMEM213A2RRL7 107 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 M0QYG6 137 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 CLEC3BP05452 202 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 FGF2P09038 288 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 CD7P09564 240 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 OR13C7P0DN81 318 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 GPR107Q5VW38 600 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 MZT2AQ6P582 158 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 TBC1D26Q86UD7 250 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 GDPD1Q8N9F7 314 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 MUC7Q8TAX7 377 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 ZNF502Q8TBZ5 544 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 NDUFA4L2Q9NRX3 87 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 OR51B2Q9Y5P1 312 aa11.24□□□□□ -0.61
LIMS3-204ENST00000482065 IGHV3-35A0A0C4DH35 117 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 DBX1A6NMT0 343 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 C3orf84H3BNL1 204 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 CBLN1P23435 193 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 GUCA2BQ16661 112 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 HAGHQ16775 308 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 FAM106AQ4KMX7 169 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 THOC7Q6I9Y2 204 aaKnown RBP11.23□□□□□ -0.61
LIMS3-204ENST00000482065 UNQ9165/PRO28630Q6UXU0 137 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 WDR89Q96FK6 387 aaPredicted RBP11.23□□□□□ -0.61
LIMS3-204ENST00000482065 NEURL2Q9BR09 285 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 WFDC10AQ9H1F0 79 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 EXTL2Q9UBQ6 330 aa11.23□□□□□ -0.61
LIMS3-204ENST00000482065 IGHV3-21A0A0B4J1V1 117 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 A8MWP6 167 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 SNAPC5O75971 98 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 IGKV1-39P01597 117 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 IGKV1D-39P04432 117 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 SERPINE2P07093 398 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 ZNF182P17025 639 aaPredicted RBP11.22□□□□□ -0.61
LIMS3-204ENST00000482065 MFAP2P55001 183 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 TM4SF20Q53R12 229 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 SLC25A24Q6NUK1 477 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 LPCAT3Q6P1A2 487 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 LAX1Q8IWV1 398 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 SLC38A6Q8IZM9 456 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 UXS1Q8NBZ7 420 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 OR52I2Q8NH67 350 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 AP3S1Q92572 193 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 LSM10Q969L4 123 aaKnown RBP11.22□□□□□ -0.61
LIMS3-204ENST00000482065 SLC2A8Q9NY64 477 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 TECRQ9NZ01 308 aaKnown RBP11.22□□□□□ -0.61
LIMS3-204ENST00000482065 THYN1Q9P016 225 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 KLK11Q9UBX7 282 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 MLXQ9UH92 298 aa11.22□□□□□ -0.61
LIMS3-204ENST00000482065 TPPPO94811 219 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 PTBP1P26599 531 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIMS3-204ENST00000482065 S100GP29377 79 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 UCP3P55916 312 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 PLET1Q6UQ28 207 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 HSD17B13Q7Z5P4 300 aaPredicted RBP11.21□□□□□ -0.61
LIMS3-204ENST00000482065 TMEM61Q8N0U2 210 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 CADM3Q8N126 398 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 DEFB125Q8N687 156 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 CITED4Q96RK1 184 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 SPATA25Q9BR10 227 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 MRPS26Q9BYN8 205 aaKnown RBP11.21□□□□□ -0.61
LIMS3-204ENST00000482065 PRNDQ9UKY0 176 aa11.21□□□□□ -0.61
LIMS3-204ENST00000482065 F11RQ9Y624 299 aaKnown RBP11.21□□□□□ -0.61
LIMS3-204ENST00000482065 DYNC2H1Q8NCM8 4307 aaKnown RBP11.2□□□□□ -0.62
LIMS3-204ENST00000482065 OR2T8A6NH00 312 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 C15orf61A6NNL5 157 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 CYB5BO43169 146 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 TGOLN2O43493 480 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 PGAM2P15259 253 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 PI3P19957 117 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 ALDH3B2P48448 385 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 CASC10Q5T4H9 136 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 ZNF57Q68EA5 555 aaPredicted RBP11.2□□□□□ -0.62
LIMS3-204ENST00000482065 BTNL8Q6UX41 500 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 VN1R17PQ8TDU5 208 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 MRGPRFQ96AM1 343 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 SEC22AQ96IW7 307 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 ABHD1Q96SE0 405 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 RETNQ9HD89 108 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 FAM212BQ9NTI7 297 aaPredicted RBP11.2□□□□□ -0.62
LIMS3-204ENST00000482065 TMEM14BQ9NUH8 114 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 CEPT1Q9Y6K0 416 aa11.2□□□□□ -0.62
LIMS3-204ENST00000482065 RBMY1BA6NDE4 496 aaKnown RBP11.19□□□□□ -0.62
LIMS3-204ENST00000482065 RBMY1EA6NEQ0 496 aaKnown RBP11.19□□□□□ -0.62
LIMS3-204ENST00000482065 OR11H12B2RN74 326 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 SCAF4O95104 1147 aaKnown RBP11.19□□□□□ -0.62
LIMS3-204ENST00000482065 CD3DP04234 171 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 IFNA6P05013 189 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 RBMY1DP0C7P1 496 aaKnown RBP11.19□□□□□ -0.62
LIMS3-204ENST00000482065 RNASE10Q5GAN6 216 aaKnown RBP11.19□□□□□ -0.62
LIMS3-204ENST00000482065 LINC00322Q6ZN03 302 aaPredicted RBP11.19□□□□□ -0.62
LIMS3-204ENST00000482065 GPR141Q7Z602 305 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 LHFPL1Q86WI0 220 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 OR4D10Q8NGI6 311 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 OR5B3Q8NH48 314 aa11.19□□□□□ -0.62
LIMS3-204ENST00000482065 SCARB1Q8WTV0 552 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms