RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 HOXA1P49639 335 aaPredicted RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 SUB1P53999 127 aaKnown RBP eCLIP5.41□□□□□ -1.54
LDB3-206ENST00000477489 RPL8P62917 257 aaKnown RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 ZNF616Q08AN1 781 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 TMEM267Q0VDI3 215 aaPredicted RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 RAB31Q13636 194 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 IZUMO4Q1ZYL8 232 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 BSXQ3C1V8 233 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 C2orf83Q53S99 150 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 MINOS1Q5TGZ0 78 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 SP5Q6BEB4 398 aaPredicted RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 HAPLN4Q86UW8 402 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 SVBPQ8N300 66 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 ZNF709Q8N972 641 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 SLC24A4Q8NFF2 622 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 OR10G4Q8NGN3 311 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 OR1L8Q8NGR8 309 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 PCNPQ8WW12 178 aaKnown RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 MBD3L1Q8WWY6 194 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 CACNG8Q8WXS5 425 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 LEAP2Q969E1 77 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 HARBI1Q96MB7 349 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 MRPL20Q9BYC9 149 aaKnown RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 COMMD5Q9GZQ3 224 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 MS4A7Q9GZW8 240 aaPredicted RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 HRH4Q9H3N8 390 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 PLEKHA3Q9HB20 300 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 HEYLQ9NQ87 328 aaPredicted RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 WDR83OSQ9Y284 106 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 OR51B2Q9Y5P1 312 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 MINOS1-NBL1R4GNA1 71 aa5.41□□□□□ -1.54
LDB3-206ENST00000477489 SPENQ96T58 3664 aaKnown RBP5.41□□□□□ -1.54
LDB3-206ENST00000477489 F8P00451 2351 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 A0A1W2PPE3 182 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 A1L4Q6 167 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 C15orf62A8K5M9 175 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 PRSS46E5RG02 174 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 RNASEK-C17orf49H0YIS7 233 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 LY6LH3BQJ8 138 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 CORTO00230 105 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 FOXH1O75593 365 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 IFNA1P01562 189 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 IFNA10P01566 189 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 SAA1P0DJI8 122 aaPredicted RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 PAX1P15863 534 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 NPY1RP25929 384 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 HTR1DP28221 377 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 CD1BP29016 333 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 GPX4P36969 197 aaPredicted RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 OPRK1P41145 380 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 PDLIM4P50479 330 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 PPT1P50897 306 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 ERHP84090 104 aaKnown RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 PAX2Q02962 417 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 ARL16Q0P5N6 197 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 HABP2Q14520 560 aaPredicted RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 TMEM41BQ5BJD5 291 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 ETV3LQ6ZN32 361 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 TMEM182Q6ZP80 229 aaPredicted RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 THNSL2Q86YJ6 484 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 MMD2Q8IY49 270 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 FAM213BQ8TBF2 198 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 SUN5Q8TC36 379 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 RNASEH2CQ8TDP1 164 aaKnown RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 RPEQ96AT9 228 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 LINC00052Q96N35 136 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 C19orf24Q9BVV8 132 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 SH3BGRL3Q9H299 93 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 UBTD1Q9HAC8 227 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 NPVFQ9HCQ7 196 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 DPM3Q9P2X0 92 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 TBL2Q9Y4P3 447 aaKnown RBP5.4□□□□□ -1.54
LDB3-206ENST00000477489 INSIG2Q9Y5U4 225 aa5.4□□□□□ -1.54
LDB3-206ENST00000477489 LRBAP50851 2863 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 IGHV1-3A0A0C4DH29 117 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 CTXND1A0A1B0GTU2 59 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 UBE2L5PA0A1B0GUS4 154 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 MEX3AA1L020 520 aaKnown RBP5.39□□□□□ -1.55
LDB3-206ENST00000477489 ODF3BA8MYP8 253 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 C22orf46C9J442 243 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 LYNX1G3V0Z9 82 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 CYB5BO43169 146 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 NXPH3O95157 252 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 SNAPINO95295 136 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 IGHV3-7P01780 117 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 IGHV2-5P01817 119 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 IGKV1-16P04430 117 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 HSPB1P04792 205 aaKnown RBP5.39□□□□□ -1.55
LDB3-206ENST00000477489 LYNX1P0DP58 116 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 DSCR9P59020 149 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 LINC00205P59089 165 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 RPS16P62249 146 aaKnown RBP5.39□□□□□ -1.55
LDB3-206ENST00000477489 SSX2Q16385 188 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 GUK1Q16774 197 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 ACOT6Q3I5F7 207 aaPredicted RBP5.39□□□□□ -1.55
LDB3-206ENST00000477489 KHDC3LQ587J8 217 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 AVPI1Q5T686 147 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 OR8G2PQ6IF36 304 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 ETFRF1Q6IPR1 90 aa5.39□□□□□ -1.55
LDB3-206ENST00000477489 CLEC9AQ6UXN8 241 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms