RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 NDUFA4L2Q9NRX3 87 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 SLC2A8Q9NY64 477 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 PRNDQ9UKY0 176 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 RYR3Q15413 4870 aa9.13□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF320A2RRD8 509 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 IZUMO1RA6ND01 250 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF785A8K8V0 405 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 IGHV3-23P01764 117 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 SERPINE2P07093 398 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 CBLN1P23435 193 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 SLC38A6Q8IZM9 456 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 GDPD1Q8N9F7 314 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 OR10W1Q8NGF6 305 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 OR1L6Q8NGR2 347 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 OR5B3Q8NH48 314 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF502Q8TBZ5 544 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 DYNLRB2Q8TF09 96 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 ATP6V0BQ99437 205 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 TSC22D3Q99576 134 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 FXYD6Q9H0Q3 95 aa9.12□□□□□ -0.95
SYNE1-223ENST00000476519 MFSD2BA6NFX1 497 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 A8MWP6 167 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 FAM25AB3EWG3 89 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 FAM25CB3EWG5 89 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 FAM25GB3EWG6 89 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 IFNA6P05013 189 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 SMIM18P0DKX4 95 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 RPA2P15927 270 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 TBPP20226 339 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 G6PCP35575 357 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 ELLP55199 621 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-223ENST00000476519 WT1-ASQ06250 92 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 PHLDA2Q53GA4 152 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 SLC25A24Q6NUK1 477 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 PLET1Q6UQ28 207 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 LSM10Q969L4 123 aaKnown RBP9.11□□□□□ -0.95
SYNE1-223ENST00000476519 MARC2Q969Z3 335 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 TMEM56Q96MV1 263 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 PALMDQ9NP74 551 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 ZC4H2Q9NQZ6 224 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 OR51B2Q9Y5P1 312 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 S4R3C0 116 aa9.11□□□□□ -0.95
SYNE1-223ENST00000476519 TMEM213A2RRL7 107 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 HAGHQ16775 308 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 GPR107Q5VW38 600 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 TBC1D26Q86UD7 250 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 ARRDC1Q8N5I2 433 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 UXS1Q8NBZ7 420 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 MUC7Q8TAX7 377 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF486Q96H40 463 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-223ENST00000476519 CITED4Q96RK1 184 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 NEURL2Q9BR09 285 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 SPATA25Q9BR10 227 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 MRPS26Q9BYN8 205 aaKnown RBP9.1□□□□□ -0.95
SYNE1-223ENST00000476519 NAA50Q9GZZ1 169 aaKnown RBP9.1□□□□□ -0.95
SYNE1-223ENST00000476519 TMEM14BQ9NUH8 114 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 MTFP1Q9UDX5 166 aa9.1□□□□□ -0.95
SYNE1-223ENST00000476519 F11RQ9Y624 299 aaKnown RBP9.1□□□□□ -0.95
SYNE1-223ENST00000476519 C8orf88P0DMB2 117 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 GPR183P32249 361 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 ALDH3B2P48448 385 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 CD81P60033 236 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 RND3P61587 244 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 GUCA2BQ16661 112 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 ANKRD55Q3KP44 614 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 RNASE10Q5GAN6 216 aaKnown RBP9.09□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF57Q68EA5 555 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-223ENST00000476519 SPSB3Q6PJ21 355 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 LINC00322Q6ZN03 302 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-223ENST00000476519 GPR141Q7Z602 305 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 OR1P1Q8NH06 330 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 OR52I2Q8NH67 350 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 OR4A16Q8NH70 328 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 SEC22AQ96IW7 307 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 ABHD1Q96SE0 405 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 HINT2Q9BX68 163 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 ZNF436Q9C0F3 470 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-223ENST00000476519 MRPL27Q9P0M9 148 aaKnown RBP9.09□□□□□ -0.95
SYNE1-223ENST00000476519 EXTL2Q9UBQ6 330 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 KLK11Q9UBX7 282 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 NSG2Q9Y328 171 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 UFC1Q9Y3C8 167 aa9.09□□□□□ -0.95
SYNE1-223ENST00000476519 TRAV25A0A0B4J276 109 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 C15orf61A6NNL5 157 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 OR11H12B2RN74 326 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 M0QYG6 137 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 TGOLN2O43493 480 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 HSPE1P61604 102 aaKnown RBP9.08□□□□□ -0.96
SYNE1-223ENST00000476519 TM4SF20Q53R12 229 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 UNQ9165/PRO28630Q6UXU0 137 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 SLC16A13Q7RTY0 426 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 H2BFWTQ7Z2G1 175 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 LHFPL1Q86WI0 220 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 TERB2Q8NHR7 220 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 SCARB1Q8WTV0 552 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 BSCL2Q96G97 398 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-223ENST00000476519 GAR1Q9NY12 217 aaKnown RBP9.08□□□□□ -0.96
SYNE1-223ENST00000476519 C21orf62Q9NYP8 219 aa9.08□□□□□ -0.96
SYNE1-223ENST00000476519 DYNC2H1Q8NCM8 4307 aaKnown RBP9.07□□□□□ -0.96
SYNE1-223ENST00000476519 DBX1A6NMT0 343 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms