RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ELK1P19419 428 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 S100A1P23297 94 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 HLA-DMAP28067 261 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 PRSS3P35030 304 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 WT1-ASQ06250 92 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 LINC00322Q6ZN03 302 aaPredicted RBP10.64□□□□□ -0.71
UPF3A-204ENST00000475218 OR5H2Q8NGV7 314 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 FCAMRQ8WWV6 532 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 SLIRPQ9GZT3 109 aaKnown RBP10.64□□□□□ -0.71
UPF3A-204ENST00000475218 ZC4H2Q9NQZ6 224 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 COMMD9Q9P000 198 aa10.64□□□□□ -0.71
UPF3A-204ENST00000475218 CCDC59Q9P031 241 aaKnown RBP10.64□□□□□ -0.71
UPF3A-204ENST00000475218 TMEM213A2RRL7 107 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 UPK1BO75841 260 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 APOA1P02647 267 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 FGF2P09038 288 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 FOLR2P14207 255 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 F2RP25116 425 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 MFAP2P55001 183 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 TAS2R46P59540 309 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 HAGHQ16775 308 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 GPHB5Q86YW7 130 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 SGPP2Q8IWX5 399 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 CADM3Q8N126 398 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 OR2K2Q8NGT1 345 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 MCFD2Q8NI22 146 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 MUC7Q8TAX7 377 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 CD300LFQ8TDQ1 290 aa10.63□□□□□ -0.71
UPF3A-204ENST00000475218 NXF2Q9GZY0 626 aaKnown RBP10.63□□□□□ -0.71
UPF3A-204ENST00000475218 TEX50A0A1B0GTY4 177 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 DBX1A6NMT0 343 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 MARCH11A6NNE9 402 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 C3orf84H3BNL1 204 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 HPGDSO60760 199 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 CD7P09564 240 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 ARL3P36405 182 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 UNQ9165/PRO28630Q6UXU0 137 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 ZNF502Q8TBZ5 544 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 AIFM2Q9BRQ8 373 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 QTRT1Q9BXR0 403 aaKnown RBP10.62□□□□□ -0.71
UPF3A-204ENST00000475218 WFDC10AQ9H1F0 79 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 EDA2RQ9HAV5 297 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 CBLN1P23435 193 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 LPAR6P43657 344 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 DEFA1P59665 94 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 DEFA3P59666 94 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 FAM209BQ5JX69 171 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 CASC10Q5T4H9 136 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 SNX29P2Q8IUI4 249 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 DMBX1Q8NFW5 382 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 EEF1AKMT3Q96AZ1 226 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 ZNF414Q96IQ9 312 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 CMTM3Q96MX0 182 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 CITED4Q96RK1 184 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 SRSF8Q9BRL6 282 aaKnown RBP10.62□□□□□ -0.71
UPF3A-204ENST00000475218 ZMAT4Q9H898 229 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 NSG2Q9Y328 171 aa10.62□□□□□ -0.71
UPF3A-204ENST00000475218 A8MWP6 167 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 KRASP01116 189 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 IGKV1-39P01597 117 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 IGKV1D-39P04432 117 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 CLEC3BP05452 202 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 HIST1H1BP16401 226 aaKnown RBP10.61□□□□□ -0.71
UPF3A-204ENST00000475218 S100A5P33763 92 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 G6PCP35575 357 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 ETV6P41212 452 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 PHLDA2Q53GA4 152 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 OR6F1Q8NGZ6 308 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 WDR89Q96FK6 387 aaPredicted RBP10.61□□□□□ -0.71
UPF3A-204ENST00000475218 COMMD5Q9GZQ3 224 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 PLEKHA3Q9HB20 300 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 NDUFA4L2Q9NRX3 87 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 MLXQ9UH92 298 aa10.61□□□□□ -0.71
UPF3A-204ENST00000475218 F8W735 103 aaPredicted RBP10.6□□□□□ -0.71
UPF3A-204ENST00000475218 GPR31O00270 319 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 DHFRP00374 187 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 DEFA4P12838 97 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 GTSCR1Q86UQ5 136 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 GDPD1Q8N9F7 314 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 LYSTQ99698 3801 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 SCPEP1Q9HB40 452 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 TRBV7-1A0A0A6YYK4 115 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 RBMY1BA6NDE4 496 aaKnown RBP10.6□□□□□ -0.71
UPF3A-204ENST00000475218 RBMY1EA6NEQ0 496 aaKnown RBP10.6□□□□□ -0.71
UPF3A-204ENST00000475218 SERPINE2P07093 398 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 RBMY1DP0C7P1 496 aaKnown RBP10.6□□□□□ -0.71
UPF3A-204ENST00000475218 TRAPPC2P0DI81 140 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 TRAPPC2BP0DI82 140 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 GPR183P32249 361 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 CD81P60033 236 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 IFITM3Q01628 133 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 TM4SF20Q53R12 229 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 AKAP14Q86UN6 197 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 TMEM61Q8N0U2 210 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 DEFB125Q8N687 156 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 DYNLRB2Q8TF09 96 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 CXorf58Q96LI9 332 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 RETNQ9HD89 108 aa10.6□□□□□ -0.71
UPF3A-204ENST00000475218 IGHV3-35A0A0C4DH35 117 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 M0QYG6 137 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms