RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 PLGLAQ15195 96 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 MMDQ15546 238 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 OR2G3Q8NGZ4 309 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 OR2T10Q8NGZ9 312 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 CITED4Q96RK1 184 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 FBXL15Q9H469 300 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 UQCC1Q9NVA1 299 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 PLA2G2EQ9NZK7 142 aa15.21■□□□□ 0.03
SMC4-209ENST00000468653 CA2P00918 260 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 ERHP84090 104 aaKnown RBP15.21■□□□□ 0.02
SMC4-209ENST00000468653 TNXAQ16473 311 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 MRGPRG-AS1Q2M3A8 158 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 LRRC75BQ2VPJ9 315 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 C10orf55Q5SWW7 151 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 PPP1R27Q86WC6 154 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 OR10W1Q8NGF6 305 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 EAF1Q96JC9 268 aaPredicted RBP15.21■□□□□ 0.02
SMC4-209ENST00000468653 C7orf69Q9H7B7 122 aa15.21■□□□□ 0.02
SMC4-209ENST00000468653 POLQO75417 2590 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 MAS1LP35410 378 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 SNCAP37840 140 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 Q5PR19 223 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 TMEM182Q6ZP80 229 aaPredicted RBP15.2■□□□□ 0.02
SMC4-209ENST00000468653 TMEM170AQ8WVE7 144 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 SAT2Q96F10 170 aaPredicted RBP15.2■□□□□ 0.02
SMC4-209ENST00000468653 PARD6GQ9BYG4 376 aaPredicted RBP15.2■□□□□ 0.02
SMC4-209ENST00000468653 WDR61Q9GZS3 305 aaKnown RBP15.2■□□□□ 0.02
SMC4-209ENST00000468653 HIF1ANQ9NWT6 349 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 KIAA1456Q9P272 454 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 CELSR2Q9HCU4 2923 aa15.2■□□□□ 0.02
SMC4-209ENST00000468653 A0A096LNT2 108 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 TRAV20A0A0B4J274 112 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 E7EUB6 86 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 NBR2O15453 112 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 GNB1P62873 340 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 LINC01356Q8N9X3 169 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 MBD6Q96DN6 1003 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 C1orf159Q96HA4 380 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 RFNGQ9Y644 331 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 IGHV3OR16-10A0A075B7F0 116 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 IGHV1-69DA0A0B4J2H0 117 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 IGHV1-69P01742 117 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 PRH1P02810 166 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 GATA3P23771 443 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 BRS3P32247 399 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 RPL27AP46776 148 aaKnown RBP15.19■□□□□ 0.02
SMC4-209ENST00000468653 RAB5CP51148 216 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 ATP5IP56385 69 aaPredicted RBP15.19■□□□□ 0.02
SMC4-209ENST00000468653 BLOC1S1P78537 153 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 PIP4P2Q8N4L2 257 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 AJUBAQ96IF1 538 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 MED9Q9NWA0 146 aa15.19■□□□□ 0.02
SMC4-209ENST00000468653 ABCA12Q86UK0 2595 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 TRAV40A0A0B4J280 105 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 CGB1A6NKQ9 187 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 RNF223E7ERA6 249 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 INS-IGF2F8WCM5 200 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 TEX46H3BTG2 121 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 S100A1P23297 94 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 LOXL1Q08397 574 aaPredicted RBP15.18■□□□□ 0.02
SMC4-209ENST00000468653 MRPL41Q8IXM3 137 aaKnown RBP15.18■□□□□ 0.02
SMC4-209ENST00000468653 NPBQ8NG41 125 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 TAF15Q92804 592 aaKnown RBP eCLIP15.18■□□□□ 0.027e-26■■■■□ 25.9
SMC4-209ENST00000468653 RSG1Q9BU20 258 aa15.18■□□□□ 0.02
SMC4-209ENST00000468653 HELZ2Q9BYK8 2649 aaKnown RBP15.18■□□□□ 0.02
SMC4-209ENST00000468653 SMCO3A2RU48 225 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 FAM106CPP0CH98 169 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 COMPP49747 757 aaPredicted RBP15.17■□□□□ 0.02
SMC4-209ENST00000468653 VWC2Q2TAL6 325 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 C2orf83Q53S99 150 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 RUSC1-AS1Q66K80 236 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 GGACTQ9BVM4 153 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 REG4Q9BYZ8 158 aa15.17■□□□□ 0.02
SMC4-209ENST00000468653 NAV2Q8IVL1 2488 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 UMAD1C9J7I0 102 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 NDUFA3O95167 84 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 OR13C7P0DN81 318 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 RNASE2P10153 161 aaKnown RBP15.16■□□□□ 0.02
SMC4-209ENST00000468653 TMEM11P17152 192 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 FGF7P21781 194 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 CAMLGP49069 296 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 DLK1P80370 383 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 EBI3Q14213 229 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 TUSC1Q2TAM9 212 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 AKR1C8PQ5T2L2 129 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 PXDC1Q5TGL8 231 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 FBXO7Q9Y3I1 522 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 A0A1B0GW64 132 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 PRSS46E5RG02 174 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 TRIM77I1YAP6 450 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 FCN1O00602 326 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 WT1-ASQ06250 92 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 BSXQ3C1V8 233 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 Q6ZRG5 221 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 MAPK1IP1LQ8NDC0 245 aa15.16■□□□□ 0.02
SMC4-209ENST00000468653 PSMG3Q9BT73 122 aaPredicted RBP15.16■□□□□ 0.02
SMC4-209ENST00000468653 NCBP2LA6PVI3 153 aaKnown RBP15.15■□□□□ 0.02
SMC4-209ENST00000468653 CNIH1O95406 144 aa15.15■□□□□ 0.02
SMC4-209ENST00000468653 SUB1P53999 127 aaKnown RBP eCLIP15.15■□□□□ 0.02
SMC4-209ENST00000468653 FBLN7Q53RD9 439 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms