RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	SAA2-SAA4	A0A096LPE2	208 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	IGHV3-64D	A0A0J9YX35	117 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	MMP23A	O75900	390 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	IGHV1-46	P01743	117 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	SAA2	P0DJI9	122 aa	Predicted RBP	7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	CA7	P43166	264 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	TFPI2	P48307	235 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	OR5T1	Q8NG75	326 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	SFXN3	Q9BWM7	321 aa		7.15	□□□□□ -1.26
SYNE1-215	ENST00000460912	PTPRQ	Q9UMZ3	2332 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	PPP1R2P9	O14990	202 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	RAB4A	P20338	218 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	PSMB3	P49720	205 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	RAB11A	P62491	216 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	ZNF808	Q8N4W9	903 aa	Predicted RBP	7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	SCGB1C1	Q8TD33	95 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	FAM210B	Q96KR6	192 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	WFIKKN1	Q96NZ8	548 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	CALY	Q9NYX4	217 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	IL19	Q9UHD0	177 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	DUSP13	Q9UII6	198 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	PSG11	Q9UQ72	335 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	ZNF257	Q9Y2Q1	563 aa		7.15	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGHV3-43	A0A0B4J1X8	118 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	GOSR1	O95249	250 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	THBD	P07204	575 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGHV3-43D	P0DP04	118 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	FGF7	P21781	194 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	KIR2DS2	P43631	304 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	TMEM30B	Q3MIR4	351 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	C16orf82	Q7Z2V1	217 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	C11orf42	Q8N5U0	333 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	ZNRF1	Q8ND25	227 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	ST6GALNAC6	Q969X2	333 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	C14orf144	Q96I85	54 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR2V2	Q96R30	315 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	HIST1H2BL	Q99880	126 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	MS4A5	Q9H3V2	200 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	KCNIP2	Q9NS61	270 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	ZFP92	A6NM28	416 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	SRRM4	A7MD48	611 aa	Known RBP	7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	TIMM8A	O60220	97 aa	Predicted RBP	7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	NPS	P0C0P6	89 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	FFAR4	Q5NUL3	377 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	MRPL41	Q8IXM3	137 aa	Known RBP	7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	PATZ1	Q9HBE1	687 aa	Known RBP	7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	PROCR	Q9UNN8	238 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912		A8MXE2	369 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	CT45A6	P0DMU7	189 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	CT45A5	P0DMU8	189 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	CT45A7	P0DMV0	189 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	IL2RG	P31785	369 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	PRSS8	Q16651	343 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	TP53TG3	Q9ULZ0	132 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912	FBN2	P35556	2912 aa		7.14	□□□□□ -1.27
SYNE1-215	ENST00000460912		K7EN84	100 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	OVOL3	O00110	214 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	CYB5B	O43169	146 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	ESD	P10768	282 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	HIST1H1B	P16401	226 aa	Known RBP	7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	GABRA2	P47869	451 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	FOXL1	Q12952	345 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	TMEM241	Q24JQ0	296 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	H2BFWT	Q7Z2G1	175 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR10P1	Q8NGE3	313 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGFBPL1	Q8WX77	278 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	VKORC1	Q9BQB6	163 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	GPR61	Q9BZJ8	451 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	SLC25A22	Q9H936	323 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	TMEM140	Q9NV12	185 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	YTHDF2	Q9Y5A9	579 aa	Known RBP	7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	LY96	Q9Y6Y9	160 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	DOCK11	Q5JSL3	2073 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGLV2-23	P01705	113 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	SRP14	P37108	136 aa	Known RBP	7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	FABP6	P51161	128 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	ELL	P55199	621 aa	Predicted RBP	7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	SRSF1	Q07955	248 aa	Known RBP eCLIP	7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	MZT1	Q08AG7	82 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR5R1	Q8NH85	324 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	LHX4	Q969G2	390 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	DEFB108A	A8MXU0	73 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	PAX2	Q02962	417 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR8G2P	Q6IF36	304 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	TMEM183A	Q8IXX5	376 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	C1orf87	Q8N0U7	546 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR2Z1	Q8NG97	314 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	DERL1	Q9BUN8	251 aa		7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	RPUSD1	Q9UJJ7	312 aa	Known RBP	7.13	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGHV3OR15-7	A0A075B7D8	119 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	SPINT2	O43291	252 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	HRAS	P01112	189 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	YPEL3	P61236	119 aa	Predicted RBP	7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR4A47	Q6IF82	309 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	CNEP1R1	Q8N9A8	125 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	ANAPC16	Q96DE5	110 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	TXNDC17	Q9BRA2	123 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	ACTR3C	Q9C0K3	210 aa	Predicted RBP	7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	SLC45A2	Q9UMX9	530 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	TCF19	Q9Y242	345 aa		7.12	□□□□□ -1.27

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