RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 Q499Y3 187 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 MS4A13Q5J8X5 152 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 DNAJC24Q6P3W2 148 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 Q6Q795 121 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 Q75L30 129 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 SFTPA1Q8IWL2 248 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 SGPP2Q8IWX5 399 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 C11orf53Q8IXP5 236 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 TMEM183AQ8IXX5 376 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 FBXL14Q8N1E6 418 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 DEFB125Q8N687 156 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 ZFP62Q8NB50 900 aaPredicted RBP4.34□□□□□ -1.71
VPS41-209ENST00000457055 NUP35Q8NFH5 326 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 OR2T33Q8NG76 320 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 OR5D14Q8NGL3 314 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 OR2A1Q8NGT9 310 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 NAA38Q9BRA0 125 aaKnown RBP4.34□□□□□ -1.71
VPS41-209ENST00000457055 MRPL32Q9BYC8 188 aaKnown RBP4.34□□□□□ -1.71
VPS41-209ENST00000457055 KRTAP2-2Q9BYT5 123 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 EXOSC3Q9NQT5 275 aaKnown RBP4.34□□□□□ -1.71
VPS41-209ENST00000457055 PROCRQ9UNN8 238 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 FUT9Q9Y231 359 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 NCKAP5O14513 1909 aa4.34□□□□□ -1.71
VPS41-209ENST00000457055 SPEGQ15772 3267 aa4.34□□□□□ -1.72
VPS41-209ENST00000457055 CNOT1A5YKK6 2376 aaKnown RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 MICAL3Q7RTP6 2002 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 IGLV3-22A0A075B6J6 115 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 C5orf49A4QMS7 147 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 KNCNA6PVL3 124 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 CD300LBA8K4G0 201 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 SHISA9B4DS77 424 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 F6UB75 175 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LINC01565O15544 149 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 GABARAPO95166 117 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 DUS4LO95620 317 aaKnown RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 NUDT14O95848 222 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 TNFP01375 233 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 ATP1B1P05026 303 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 ATP5G1P05496 136 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LINC00032P0C843 101 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 PGA4P0DJD7 388 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 PGA3P0DJD8 388 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 PGA5P0DJD9 388 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 SMIM10L2AP0DMW4 78 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 SMIM10L2BP0DMW5 78 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LAMP1P11279 417 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 FGF3P11487 239 aaPredicted RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 GP1BBP13224 206 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 SAA4P35542 130 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 ZNF93P35789 620 aaPredicted RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 CCR2P41597 374 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LPAR6P43657 344 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 HNRNPA3P51991 378 aaKnown RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 LIM2P55344 173 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 NDUFV3P56181 108 aaKnown RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 MTPNP58546 118 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LOXL1Q08397 574 aaPredicted RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 C12orf74Q32Q52 190 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LGALSLQ3ZCW2 172 aaPredicted RBP4.33□□□□□ -1.72
VPS41-209ENST00000457055 TTC32Q5I0X7 151 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 UNQ5815/PRO19632Q6UWF5 114 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 LCN15Q6UWW0 184 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 SCGB1D4Q6XE38 83 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 DGAT2L6Q6ZPD8 337 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 RNF175Q8N4F7 328 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 OR4B1Q8NGF8 309 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 OR5AK2Q8NH90 309 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 C10orf82Q8WW14 230 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 GNB1LQ9BYB4 327 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 TMEM9BQ9NQ34 198 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 HEBP1Q9NRV9 189 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 CA10Q9NS85 328 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 MARCH5Q9NX47 278 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 ZNF226Q9NYT6 803 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 CCDC167Q9P0B6 97 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 TTC3P53804 2025 aa4.33□□□□□ -1.72
VPS41-209ENST00000457055 TRAV8-2A0A0B4J237 113 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 TRBV5-5A0A0J9YX44 114 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 C5orf63A6NC05 138 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 B4DXG7 233 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 RER1O15258 196 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 DEDDO75618 318 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 CFDP00746 253 aaPredicted RBP4.32□□□□□ -1.72
VPS41-209ENST00000457055 PTHP01270 115 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 IGKV1D-16P01601 117 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 IFITM1P13164 125 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 RBMXP38159 391 aaKnown RBP4.32□□□□□ -1.72
VPS41-209ENST00000457055 ATP5G3P48201 142 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 ZNF83P51522 516 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 KRTAP10-6P60371 365 aaPredicted RBP4.32□□□□□ -1.72
VPS41-209ENST00000457055 ZNF146Q15072 292 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 ZNF506Q5JVG8 444 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 AMMECR1LQ6DCA0 310 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 UFSP1Q6NVU6 142 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 MRPL54Q6P161 138 aaKnown RBP4.32□□□□□ -1.72
VPS41-209ENST00000457055 PTAR1Q7Z6K3 402 aaPredicted RBP4.32□□□□□ -1.72
VPS41-209ENST00000457055 PIANPQ8IYJ0 282 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 NRACQ8N912 160 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 DNAJA3Q96EY1 480 aa4.32□□□□□ -1.72
VPS41-209ENST00000457055 POMKQ9H5K3 350 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms