RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 MARVELD1Q9BSK0 173 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 C19orf24Q9BVV8 132 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 OR51J1Q9H342 316 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SHPKQ9UHJ6 478 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 STAB1Q9NY15 2570 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 TMEM89A2RUT3 159 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 CLPSL1A2RUU4 121 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 C15orf61A6NNL5 157 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 UPK2O00526 184 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 ATP6V0E1O15342 81 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SNAPC5O75971 98 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 CNIH1O95406 144 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 IGKV1-5P01602 117 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 IGF1P05019 195 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 IL6RP08887 468 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 P0C879 139 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 HLA-GP17693 338 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 VDAC1P21796 283 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 COMPP49747 757 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 CRIP2P52943 208 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 GNB1P62873 340 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 NDPQ00604 133 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 PJVKQ0ZLH3 352 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 FXYD3Q14802 87 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 TNXAQ16473 311 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 MRGPRG-AS1Q2M3A8 158 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 ANKRD55Q3KP44 614 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 GAGE13Q4V321 117 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SELENOHQ8IZQ5 122 aaKnown RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 ABHD5Q8WTS1 349 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SRSF12Q8WXF0 261 aaKnown RBP6.91□□□□□ -1.3
SYNE1-214ENST00000454018 CLCC1Q96S66 551 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 PHB2Q99623 299 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 GON7Q9BXV9 100 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 PARP11Q9NR21 331 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 SERTAD4Q9NUC0 356 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 FKBP11Q9NYL4 201 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 PRNDQ9UKY0 176 aa6.91□□□□□ -1.3
SYNE1-214ENST00000454018 INMT-MINDY4F8WBC2 141 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 FCN1O00602 326 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 DHFRP00374 187 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 IL5P05113 134 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 OR9G9P0C7N8 305 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 MDKP21741 143 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 RPL27AP46776 148 aaKnown RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 SSBP2P81877 361 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 FHL3Q13643 280 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 NMSQ5H8A3 153 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 THOC7Q6I9Y2 204 aaKnown RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 STPG2Q8N412 459 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 OR5B3Q8NH48 314 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 OR4A16Q8NH70 328 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 SGMS2Q8NHU3 365 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 GRPEL2Q8TAA5 225 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 ZNF431Q8TF32 576 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 CHPT1Q8WUD6 406 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 MITD1Q8WV92 249 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 TAF15Q92804 592 aaKnown RBP eCLIP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 SPIN2AQ99865 258 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 SPIN2BQ9BPZ2 258 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 COMMD5Q9GZQ3 224 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 GPN1Q9HCN4 374 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 TMEM14BQ9NUH8 114 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 CACFD1Q9UGQ2 172 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 FOXA2Q9Y261 457 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-214ENST00000454018 ZNF257Q9Y2Q1 563 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 TMED3Q9Y3Q3 217 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 RNF114Q9Y508 228 aa6.9□□□□□ -1.31
SYNE1-214ENST00000454018 TRAV3A0A0B4J244 114 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 RBMXL2O75526 392 aaKnown RBP6.89□□□□□ -1.31
SYNE1-214ENST00000454018 PROK1P58294 105 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 OR2B8PP59922 312 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 SLC35B1P78383 322 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 TMEM267Q0VDI3 215 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-214ENST00000454018 ECSCRQ19T08 205 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 KRTAP21-3Q3LHN1 58 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 AWAT1Q58HT5 328 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 ZNF429Q86V71 674 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 KLHDC1Q8N7A1 406 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 MINDY2Q8NBR6 621 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 OR52B4Q8NGK2 314 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 TMEM68Q96MH6 324 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 SEC22CQ9BRL7 303 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 QTRT1Q9BXR0 403 aaKnown RBP6.89□□□□□ -1.31
SYNE1-214ENST00000454018 COA4Q9NYJ1 87 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 FAM30AQ9NZY2 134 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 TENM1Q9UKZ4 2725 aa6.89□□□□□ -1.31
SYNE1-214ENST00000454018 FBN1P35555 2871 aaKnown RBP6.89□□□□□ -1.31
SYNE1-214ENST00000454018 TRAV41A0A0B4J266 112 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 A0A0G2JRQ6 117 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 LOC100996750A0A140TA64 210 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 PSMB11A5LHX3 300 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 LINC01548A6NM66 108 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 SNRPGP15A8MWD9 76 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 SULT1A3P0DMM9 295 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 SULT1A4P0DMN0 295 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 SLC25A6P12236 298 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 SPNP16150 400 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 OXA1LQ15070 435 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 AARDQ4LEZ3 155 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms