RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 GTSCR1Q86UQ5 136 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 GDPD1Q8N9F7 314 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 ZNF502Q8TBZ5 544 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 ZMAT4Q9H898 229 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 ZC4H2Q9NQZ6 224 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 TECRQ9NZ01 308 aaKnown RBP14.66□□□□□ -0.06
USP40-207ENST00000450940 THYN1Q9P016 225 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 S4R3C0 116 aa14.66□□□□□ -0.06
USP40-207ENST00000450940 A8MWP6 167 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 CLEC3BP05452 202 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 G6PCP35575 357 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 FAM106AQ4KMX7 169 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 PHLDA2Q53GA4 152 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 SLC38A6Q8IZM9 456 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 VN1R17PQ8TDU5 208 aa14.65□□□□□ -0.06
USP40-207ENST00000450940 MRPS26Q9BYN8 205 aaKnown RBP14.65□□□□□ -0.06
USP40-207ENST00000450940 FAM25AB3EWG3 89 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 FAM25CB3EWG5 89 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 FAM25GB3EWG6 89 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 C3orf84H3BNL1 204 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 CYB5BO43169 146 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 SNAPC5O75971 98 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 OR13C7P0DN81 318 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 EDN2P20800 178 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 CBLN1P23435 193 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 S100GP29377 79 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 TBC1D26Q86UD7 250 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 TMEM14BQ9NUH8 114 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 FKBP11Q9NYL4 201 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 KLK11Q9UBX7 282 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 MTFP1Q9UDX5 166 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 PRNDQ9UKY0 176 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 OR51B2Q9Y5P1 312 aa14.64□□□□□ -0.07
USP40-207ENST00000450940 TMEM213A2RRL7 107 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 LINC00322Q6ZN03 302 aaPredicted RBP14.63□□□□□ -0.07
USP40-207ENST00000450940 LHFPL1Q86WI0 220 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 OR5B3Q8NH48 314 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 OR52I2Q8NH67 350 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 C15orf40Q8WUR7 153 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 LSM10Q969L4 123 aaKnown RBP14.63□□□□□ -0.07
USP40-207ENST00000450940 SEC22AQ96IW7 307 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 ABHD1Q96SE0 405 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 ATP6V0BQ99437 205 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 TSC22D3Q99576 134 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 NSG2Q9Y328 171 aa14.63□□□□□ -0.07
USP40-207ENST00000450940 M0QYG6 137 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 IGKV1-39P01597 117 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 IGKV1D-39P04432 117 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 TBPP20226 339 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 MFAP2P55001 183 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 RND3P61587 244 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 HAGHQ16775 308 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 ARRDC1Q8N5I2 433 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 DYNLRB2Q8TF09 96 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 ZNF486Q96H40 463 aaPredicted RBP14.62□□□□□ -0.07
USP40-207ENST00000450940 EXTL2Q9UBQ6 330 aa14.62□□□□□ -0.07
USP40-207ENST00000450940 F11RQ9Y624 299 aaKnown RBP14.62□□□□□ -0.07
USP40-207ENST00000450940 DBX1A6NMT0 343 aa14.61□□□□□ -0.07
USP40-207ENST00000450940 C15orf61A6NNL5 157 aa14.61□□□□□ -0.07
USP40-207ENST00000450940 C8orf88P0DMB2 117 aa14.61□□□□□ -0.07
USP40-207ENST00000450940 RNASE10Q5GAN6 216 aaKnown RBP14.61□□□□□ -0.07
USP40-207ENST00000450940 GPR141Q7Z602 305 aa14.61□□□□□ -0.07
USP40-207ENST00000450940 TMEM56Q96MV1 263 aa14.61□□□□□ -0.07
USP40-207ENST00000450940 ZNF436Q9C0F3 470 aaPredicted RBP14.61□□□□□ -0.07
USP40-207ENST00000450940 MIXL1Q9H2W2 232 aa14.61□□□□□ -0.07
USP40-207ENST00000450940 ZNF320A2RRD8 509 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 CD3DP04234 171 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 IFNA6P05013 189 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 GPR183P32249 361 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 ELLP55199 621 aaPredicted RBP14.6□□□□□ -0.07
USP40-207ENST00000450940 CD81P60033 236 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 SLC25A24Q6NUK1 477 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 UNQ9165/PRO28630Q6UXU0 137 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 OR1L6Q8NGR2 347 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 MUC7Q8TAX7 377 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 CACNG8Q8WXS5 425 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 MARC2Q969Z3 335 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 CITED4Q96RK1 184 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 NEURL2Q9BR09 285 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 TUBA4BQ9H853 241 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 SLC2A8Q9NY64 477 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 RYR3Q15413 4870 aa14.6□□□□□ -0.07
USP40-207ENST00000450940 TGOLN2O43493 480 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 CD74P04233 296 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 CD7P09564 240 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 SPCS2Q15005 226 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 PLET1Q6UQ28 207 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 TMEM229BQ8NBD8 167 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 UXS1Q8NBZ7 420 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 HINT2Q9BX68 163 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 PALMDQ9NP74 551 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 MLXQ9UH92 298 aa14.59□□□□□ -0.07
USP40-207ENST00000450940 GABARAPH6UMI1 98 aa14.58□□□□□ -0.08
USP40-207ENST00000450940 K7EIM0 57 aa14.58□□□□□ -0.08
USP40-207ENST00000450940 SSBP1Q04837 148 aaKnown RBP14.58□□□□□ -0.08
USP40-207ENST00000450940 TM4SF20Q53R12 229 aa14.58□□□□□ -0.08
USP40-207ENST00000450940 RNASE12Q5GAN4 147 aaKnown RBP14.58□□□□□ -0.08
USP40-207ENST00000450940 ZNF57Q68EA5 555 aaPredicted RBP14.58□□□□□ -0.08
USP40-207ENST00000450940 SPSB3Q6PJ21 355 aa14.58□□□□□ -0.08
USP40-207ENST00000450940 H2BFWTQ7Z2G1 175 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms